User menu

Accès à distance ? S'identifier sur le proxy UCLouvain

Ten Simple Rules for Taking Advantage of Git and GitHub

  • Open access
  • PDF
  • 600.00 K
  1. Goodman Alyssa, Pepe Alberto, Blocker Alexander W., Borgman Christine L., Cranmer Kyle, Crosas Merce, Di Stefano Rosanne, Gil Yolanda, Groth Paul, Hedstrom Margaret, Hogg David W., Kashyap Vinay, Mahabal Ashish, Siemiginowska Aneta, Slavkovic Aleksandra, Ten Simple Rules for the Care and Feeding of Scientific Data, 10.1371/journal.pcbi.1003542
  2. Perez-Riverol Yasset, Alpi Emanuele, Wang Rui, Hermjakob Henning, Vizcaíno Juan Antonio, Making proteomics data accessible and reusable: Current state of proteomics databases and repositories, 10.1002/pmic.201400302
  3. Osborne James M., Bernabeu Miguel O., Bruna Maria, Calderhead Ben, Cooper Jonathan, Dalchau Neil, Dunn Sara-Jane, Fletcher Alexander G., Freeman Robin, Groen Derek, Knapp Bernhard, McInerny Greg J., Mirams Gary R., Pitt-Francis Joe, Sengupta Biswa, Wright David W., Yates Christian A., Gavaghan David J., Emmott Stephen, Deane Charlotte, Ten Simple Rules for Effective Computational Research, 10.1371/journal.pcbi.1003506
  4. Vihinen Mauno, No more hidden solutions in bioinformatics, 10.1038/521261a
  5. Blischak John D., Davenport Emily R., Wilson Greg, A Quick Introduction to Version Control with Git and GitHub, 10.1371/journal.pcbi.1004668
  6. K Ram, Source code for biology and medicine, 8, 1 (2013)
  7. L Dabbish, 1277 (2012)
  8. (2016)
  9. Noble William Stafford, A Quick Guide to Organizing Computational Biology Projects, 10.1371/journal.pcbi.1000424
  10. Leprevost Felipe da Veiga, Barbosa Valmir C., Francisco Eduardo L., Perez-Riverol Yasset, Carvalho Paulo C., On best practices in the development of bioinformatics software, 10.3389/fgene.2014.00199
  11. M Fowler (2006)
  12. Vizcaíno Juan A, Deutsch Eric W, Wang Rui, Csordas Attila, Reisinger Florian, Ríos Daniel, Dianes José A, Sun Zhi, Farrah Terry, Bandeira Nuno, Binz Pierre-Alain, Xenarios Ioannis, Eisenacher Martin, Mayer Gerhard, Gatto Laurent, Campos Alex, Chalkley Robert J, Kraus Hans-Joachim, Albar Juan Pablo, Martinez-Bartolomé Salvador, Apweiler Rolf, Omenn Gilbert S, Martens Lennart, Jones Andrew R, Hermjakob Henning, ProteomeXchange provides globally coordinated proteomics data submission and dissemination, 10.1038/nbt.2839
  13. A Ahmadia (2015)
  14. Credit where credit is overdue, 10.1038/nbt0709-579
  15. Nucleic Acids Res, 43, D1042 (2015)
  16. J Buckheit, 55 (1995)
  17. Cock P. J. A., Antao T., Chang J. T., Chapman B. A., Cox C. J., Dalke A., Friedberg I., Hamelryck T., Kauff F., Wilczynski B., de Hoon M. J. L., Biopython: freely available Python tools for computational molecular biology and bioinformatics, 10.1093/bioinformatics/btp163
  18. Goecks Jeremy, Nekrutenko Anton, Taylor James, Galaxy Team The, Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, 10.1186/gb-2010-11-8-r86
  19. Gatto Laurent, Lilley Kathryn S., MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation, 10.1093/bioinformatics/btr645
  20. Sturm Marc, Bertsch Andreas, Gröpl Clemens, Hildebrandt Andreas, Hussong Rene, Lange Eva, Pfeifer Nico, Schulz-Trieglaff Ole, Zerck Alexandra, Reinert Knut, Kohlbacher Oliver, OpenMS – An open-source software framework for mass spectrometry, 10.1186/1471-2105-9-163
  21. Perez-Riverol Yasset, Xu Qing-Wei, Wang Rui, Uszkoreit Julian, Griss Johannes, Sanchez Aniel, Reisinger Florian, Csordas Attila, Ternent Tobias, del-Toro Noemi, Dianes Jose A., Eisenacher Martin, Hermjakob Henning, Vizcaíno Juan Antonio, PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets, 10.1074/mcp.o115.050229
  22. Eglen Stephen John, Weeks Michael, Jessop Mark, Simonotto Jennifer, Jackson Tom, Sernagor Evelyne, A data repository and analysis framework for spontaneous neural activity recordings in developing retina, 10.1186/2047-217x-3-3
  23. Li H., Handsaker B., Wysoker A., Fennell T., Ruan J., Homer N., Marth G., Abecasis G., Durbin R., , The Sequence Alignment/Map format and SAMtools, 10.1093/bioinformatics/btp352
Bibliographic reference Perez-Riverol, Y. ; Gatto, Laurent ; Wang, R. ; Sachsenberg, T. ; Uszkoreit, J. ; et. al. Ten Simple Rules for Taking Advantage of Git and GitHub. In: PLoS Computational Biology, Vol. 12, no.7 (2016)
Permanent URL http://hdl.handle.net/2078/202712