User menu

Commensalism: The Case of the Human Zymobiome

Bibliographic reference Inácio, João ; Daniel, Heide-Marie. Commensalism: The Case of the Human Zymobiome. In: Pietro Buzzini, Marc-André Lachance, Andrey Yurkov Edts., Yeasts in Natural Ecosystems : Ecology, Springer 2017  2017, p. 211-228
Permanent URL http://hdl.handle.net/2078.1/188184
  1. Anderson H. W., Yeast-Like Fungi of the Human Intestinal Tract, 10.1093/infdis/21.4.341
  2. Angebault Cécile, Djossou Félix, Abélanet Sophie, Permal Emmanuelle, Ben Soltana Mouna, Diancourt Laure, Bouchier Christiane, Woerther Paul-Louis, Catzeflis François, Andremont Antoine, d'Enfert Christophe, Bougnoux Marie-Elisabeth, Candida albicans Is Not Always the Preferential Yeast Colonizing Humans: A Study in Wayampi Amerindians, 10.1093/infdis/jit389
  3. Arumugam Manimozhiyan, Raes Jeroen, Pelletier Eric, Le Paslier Denis, Yamada Takuji, Mende Daniel R., Fernandes Gabriel R., Tap Julien, Bruls Thomas, Batto Jean-Michel, Bertalan Marcelo, Borruel Natalia, Casellas Francesc, Fernandez Leyden, Gautier Laurent, Hansen Torben, Hattori Masahira, Hayashi Tetsuya, Kleerebezem Michiel, Kurokawa Ken, Leclerc Marion, Levenez Florence, Manichanh Chaysavanh, Nielsen H. Bjørn, Nielsen Trine, Pons Nicolas, Poulain Julie, Qin Junjie, Sicheritz-Ponten Thomas, Tims Sebastian, Torrents David, Ugarte Edgardo, Zoetendal Erwin G., Wang Jun, Guarner Francisco, Pedersen Oluf, de Vos Willem M., Brunak Søren, Doré Joel, Antolín María, Artiguenave François, Blottiere Hervé M., Almeida Mathieu, Brechot Christian, Cara Carlos, Chervaux Christian, Cultrone Antonella, Delorme Christine, Denariaz Gérard, Dervyn Rozenn, Foerstner Konrad U., Friss Carsten, van de Guchte Maarten, Guedon Eric, Haimet Florence, Huber Wolfgang, van Hylckama-Vlieg Johan, Jamet Alexandre, Juste Catherine, Kaci Ghalia, Knol Jan, Lakhdari Omar, Layec Severine, Le Roux Karine, Maguin Emmanuelle, Mérieux Alexandre, Melo Minardi Raquel, M'rini Christine, Muller Jean, Oozeer Raish, Parkhill Julian, Renault Pierre, Rescigno Maria, Sanchez Nicolas, Sunagawa Shinichi, Torrejon Antonio, Turner Keith, Vandemeulebrouck Gaetana, Varela Encarna, Winogradsky Yohanan, Zeller Georg, Weissenbach Jean, Ehrlich S. Dusko, Bork Peer, Enterotypes of the human gut microbiome, 10.1038/nature09944
  4. ASHFORD BAILEY K., RELATION OF THE GENUS "MONILIA" TO CERTAIN FERMENTATIVE CONDITIONS OF THE INTESTINAL TRACT IN PORTO RICO, 10.1001/jama.1915.02570490009004
  5. Benadé Eliska, Stone Wendy, Mouton Marnel, Postma Ferdinand, Wilsenach Jac, Botha Alfred, Binary Interactions of Antagonistic Bacteria with Candida albicans Under Aerobic and Anaerobic Conditions, 10.1007/s00248-015-0706-4
  6. Bittinger Kyle, Charlson Emily S, Loy Elizabeth, Shirley David J, Haas Andrew R, Laughlin Alice, Yi Yanjie, Wu Gary D, Lewis James D, Frank Ian, Cantu Edward, Diamond Joshua M, Christie Jason D, Collman Ronald G, Bushman Frederic D, Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing, 10.1186/s13059-014-0487-y
  7. Bradford L. Latéy, Ravel Jacques, The vaginal mycobiome: A contemporary perspective on fungi in women's health and diseases, 10.1080/21505594.2016.1237332
  8. Casadevall Arturo, Determinants of virulence in the pathogenic fungi, 10.1016/j.fbr.2007.02.007
  9. Charlson Emily S., Diamond Joshua M., Bittinger Kyle, Fitzgerald Ayannah S., Yadav Anjana, Haas Andrew R., Bushman Frederic D., Collman Ronald G., Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant, 10.1164/rccm.201204-0693oc
  10. Chen Yu, Chen Zhenjing, Guo Renyong, Chen Nan, Lu Haifeng, Huang Shuai, Wang Jie, Li Lanjuan, Correlation between gastrointestinal fungi and varying degrees of chronic hepatitis B virus infection, 10.1016/j.diagmicrobio.2010.04.005
  11. Clavaud Cécile, Jourdain Roland, Bar-Hen Avner, Tichit Magali, Bouchier Christiane, Pouradier Florence, El Rawadi Charles, Guillot Jacques, Ménard-Szczebara Florence, Breton Lionel, Latgé Jean-Paul, Mouyna Isabelle, Correction: Dandruff Is Associated with Disequilibrium in the Proportion of the Major Bacterial and Fungal Populations Colonizing the Scalp, 10.1371/annotation/bcff4a59-10b7-442a-8181-12fa69209e57
  12. Clemente Jose C., Ursell Luke K., Parfrey Laura Wegener, Knight Rob, The Impact of the Gut Microbiota on Human Health: An Integrative View, 10.1016/j.cell.2012.01.035
  13. Cogen A.L., Nizet V., Gallo R.L., Skin microbiota: a source of disease or defence? : Skin microbiota, 10.1111/j.1365-2133.2008.08437.x
  14. Costello E. K., Lauber C. L., Hamady M., Fierer N., Gordon J. I., Knight R., Bacterial Community Variation in Human Body Habitats Across Space and Time, 10.1126/science.1177486
  15. Cui Lijia, Morris Alison, Ghedin Elodie, The human mycobiome in health and disease, 10.1186/gm467
  16. Cui Lijia, Lucht Lorrie, Tipton Laura, Rogers Matthew B., Fitch Adam, Kessinger Cathy, Camp Danielle, Kingsley Lawrence, Leo Nicolas, Greenblatt Ruth M., Fong Serena, Stone Stephen, Dermand John C., Kleerup Eric C., Huang Laurence, Morris Alison, Ghedin Elodie, Topographic Diversity of the Respiratory Tract Mycobiome and Alteration in HIV and Lung Disease, 10.1164/rccm.201409-1583oc
  17. Daniel Heide-Marie, Lachance Marc-André, Kurtzman Cletus P., On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription, 10.1007/s10482-014-0170-z
  18. David Lawrence A., Maurice Corinne F., Carmody Rachel N., Gootenberg David B., Button Julie E., Wolfe Benjamin E., Ling Alisha V., Devlin A. Sloan, Varma Yug, Fischbach Michael A., Biddinger Sudha B., Dutton Rachel J., Turnbaugh Peter J., Diet rapidly and reproducibly alters the human gut microbiome, 10.1038/nature12820
  19. De Sordi Luisa, Mühlschlegel Fritz A., Quorum sensing and fungal-bacterial interactions inCandida albicans: a communicative network regulating microbial coexistence and virulence, 10.1111/j.1567-1364.2009.00573.x
  20. Delhaes Laurence, Monchy Sébastien, Fréalle Emilie, Hubans Christine, Salleron Julia, Leroy Sylvie, Prevotat Anne, Wallet Frédérick, Wallaert Benoit, Dei-Cas Eduardo, Sime-Ngando Telesphore, Chabé Magali, Viscogliosi Eric, The Airway Microbiota in Cystic Fibrosis: A Complex Fungal and Bacterial Community—Implications for Therapeutic Management, 10.1371/journal.pone.0036313
  21. d’Enfert Christophe, Hidden killers: persistence of opportunistic fungal pathogens in the human host, 10.1016/j.mib.2009.05.008
  22. Diaz PI, Strausbaugh LD, Dongari-Bagtzoglou A (2014) Fungal-bacterial interactions and their relevance to oral health: linking the clinic and the bench. Front Cell Infect Microbiol 4:101
  23. Diaz Patricia I., Hong Bo-Young, Dupuy Amanda K., Strausbaugh Linda D., Mining the oral mycobiome: Methods, components, and meaning, 10.1080/21505594.2016.1252015
  24. Dickson Robert P., Erb-Downward John R., Martinez Fernando J., Huffnagle Gary B., The Microbiome and the Respiratory Tract, 10.1146/annurev-physiol-021115-105238
  25. Drell Tiina, Lillsaar Triin, Tummeleht Lea, Simm Jaak, Aaspõllu Anu, Väin Edda, Saarma Ivo, Salumets Andres, Donders Gilbert G. G., Metsis Madis, Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women, 10.1371/journal.pone.0054379
  26. Dupuy Amanda K., David Marika S., Li Lu, Heider Thomas N., Peterson Jason D., Montano Elizabeth A., Dongari-Bagtzoglou Anna, Diaz Patricia I., Strausbaugh Linda D., Redefining the Human Oral Mycobiome with Improved Practices in Amplicon-based Taxonomy: Discovery of Malassezia as a Prominent Commensal, 10.1371/journal.pone.0090899
  27. Enache-Angoulvant A., Hennequin C., Invasive Saccharomyces Infection: A Comprehensive Review, 10.1086/497832
  28. Erb Downward John R., Falkowski Nicole R., Mason Katie L., Muraglia Ryan, Huffnagle Gary B., Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans, 10.1038/srep02191
  29. Erturk-Hasdemir Deniz, Kasper Dennis L, Resident commensals shaping immunity, 10.1016/j.coi.2013.06.001
  30. Falsetta M. L., Klein M. I., Colonne P. M., Scott-Anne K., Gregoire S., Pai C.-H., Gonzalez-Begne M., Watson G., Krysan D. J., Bowen W. H., Koo H., Symbiotic Relationship between Streptococcus mutans and Candida albicans Synergizes Virulence of Plaque Biofilms In Vivo, 10.1128/iai.00087-14
  31. Findley Keisha, Oh Julia, Yang Joy, Conlan Sean, Deming Clayton, Meyer Jennifer A., Schoenfeld Deborah, Nomicos Effie, Park Morgan, Becker Jesse, Benjamin Betty, Blakesley Robert, Bouffard Gerry, Brooks Shelise, Coleman Holly, Dekhtyar Mila, Gregory Michael, Guan Xiaobin, Gupta Jyoti, Han Joel, Hargrove April, Ho Shi-ling, Johnson Taccara, Legaspi Richelle, Lovett Sean, Maduro Quino, Masiello Cathy, Maskeri Baishali, McDowell Jenny, Montemayor Casandra, Mullikin James, Park Morgan, Riebow Nancy, Schandler Karen, Schmidt Brian, Sison Christina, Stantripop Mal, Thomas James, Thomas Pam, Vemulapalli Meg, Young Alice, Kong Heidi H., Segre Julia A., Topographic diversity of fungal and bacterial communities in human skin, 10.1038/nature12171
  32. Gaitanis G., Magiatis P., Hantschke M., Bassukas I. D., Velegraki A., The Malassezia Genus in Skin and Systemic Diseases, 10.1128/cmr.00021-11
  33. Ghannoum Mahmoud A., Jurevic Richard J., Mukherjee Pranab K., Cui Fan, Sikaroodi Masoumeh, Naqvi Ammar, Gillevet Patrick M., Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals, 10.1371/journal.ppat.1000713
  34. Gill S. R., Pop M., DeBoy R. T., Eckburg P. B., Turnbaugh P. J., Samuel B. S., Gordon J. I., Relman D. A., Fraser-Liggett C. M., Nelson K. E., Metagenomic Analysis of the Human Distal Gut Microbiome, 10.1126/science.1124234
  35. Gouba N., Drancourt M., Digestive tract mycobiota: A source of infection, 10.1016/j.medmal.2015.01.007
  36. Gouba Nina, Raoult Didier, Drancourt Michel, Eukaryote Culturomics of the Gut Reveals New Species, 10.1371/journal.pone.0106994
  37. Guo Renyong, Zheng Nengneng, Lu Haifeng, Yin Hongfang, Yao Jinmei, Chen Yu, Increased Diversity of Fungal Flora in the Vagina of Patients with Recurrent Vaginal Candidiasis and Allergic Rhinitis, 10.1007/s00248-012-0084-0
  38. Hallen-Adams Heather E., Suhr Mallory J., Fungi in the healthy human gastrointestinal tract, 10.1080/21505594.2016.1247140
  39. Hallen-Adams Heather E., Kachman Stephen D., Kim Jaehyoung, Legge Ryan M., Martínez Inés, Fungi inhabiting the healthy human gastrointestinal tract: a diverse and dynamic community, 10.1016/j.funeco.2015.01.006
  40. Harding C. R., Moore A. E., Rogers S. J., Meldrum H., Scott A. E., McGlone F. P., Dandruff: a condition characterized by decreased levels of intercellular lipids in scalp stratum corneum and impaired barrier function, 10.1007/s00403-002-0323-1
  41. Hatoum Rima, Labrie Steve, Fliss Ismail, Antimicrobial and Probiotic Properties of Yeasts: From Fundamental to Novel Applications, 10.3389/fmicb.2012.00421
  42. Hoffmann C, Dollive S, Grunberg S, Chen J, Li H, Wu GD, Lewis JD, Bushman FD (2013) Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents. PLoS One 8:e66019
  43. Hogan Deborah A., Vik Åshild, Kolter Roberto, A Pseudomonas aeruginosa quorum-sensing molecule influences Candida albicans morphology : Pseudomonas inhibition of C. albicans filamentation, 10.1111/j.1365-2958.2004.04349.x
  44. Huffnagle Gary B., Noverr Mairi C., The emerging world of the fungal microbiome, 10.1016/j.tim.2013.04.002
  45. Iliev I. D., Funari V. A., Taylor K. D., Nguyen Q., Reyes C. N., Strom S. P., Brown J., Becker C. A., Fleshner P. R., Dubinsky M., Rotter J. I., Wang H. L., McGovern D. P. B., Brown G. D., Underhill D. M., Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis, 10.1126/science.1221789
  46. Imabayashi Yumi, Moriyama Masafumi, Takeshita Toru, Ieda Shinsuke, Hayashida Jun-Nosuke, Tanaka Akihiko, Maehara Takashi, Furukawa Sachiko, Ohta Miho, Kubota Keigo, Yamauchi Masaki, Ishiguro Noriko, Yamashita Yoshihisa, Nakamura Seiji, Molecular analysis of fungal populations in patients with oral candidiasis using next-generation sequencing, 10.1038/srep28110
  47. Jo Jay-Hyun, Deming Clay, Kennedy Elizabeth A., Conlan Sean, Polley Eric C., Ng Weng-lan, Segre Julia A., Kong Heidi H., Diverse Human Skin Fungal Communities in Children Converge in Adulthood, 10.1016/j.jid.2016.05.130
  48. Jo Jay-Hyun, Kennedy Elizabeth A., Kong Heidi H., Topographical and physiological differences of the skin mycobiome in health and disease, 10.1080/21505594.2016.1249093
  49. Jung Won Hee, Croll Daniel, Cho Jae Hoon, Kim Yu Ri, Lee Yang Won, Analysis of the nasal vestibule mycobiome in patients with allergic rhinitis, 10.1111/myc.12296
  50. Kalan L, Loesche M, Hodkinson BP, Heilmann K, Ruthel G, Gardner SE, Grice EA (2016) Redefining the chronic-wound microbiome: fungal communities are prevalent, dynamic, and associated with delayed healing. MBio 7:e01058-16
  51. Kennedy Michael J., Volz Paul A., Effect of various antibiotics on gastrointestinal colonization and dissemination byCandida albicans, 10.1080/00362178585380391
  52. Kerr Jonathan R., Bacterial inhibition of fungal growth and pathogenicity, 10.1080/089106099435709
  53. Kim Yun-Gi, Udayanga Kankanam Gamage Sanath, Totsuka Naoya, Weinberg Jason B., Núñez Gabriel, Shibuya Akira, Gut Dysbiosis Promotes M2 Macrophage Polarization and Allergic Airway Inflammation via Fungi-Induced PGE2, 10.1016/j.chom.2013.12.010
  54. Kim SH, Clark ST, Surendra A, Copeland JK, Wang PW, Ammar R, Collins C, Tullis DE, Nislow C, Hwang DM, Guttman DS, Cowen LE (2015) Global analysis of the fungal microbiome in cystic fibrosis patients reveals loss of function of the transcriptional repressor Nrg1 as a mechanism of pathogen adaptation. PLoS Pathog 11:e1005308
  55. Klotz Stephen A., Gaur Nand K., De Armond Richard, Sheppard Donald, Khardori Nancy, Edwards John E., Lipke Peter N., El-Azizi Mohamed, Candida albicansAls proteins mediate aggregation with bacteria and yeasts, 10.1080/13693780701299333
  56. Kostoulias Xenia, Murray Gerald L., Cerqueira Gustavo M., Kong Jason B., Bantun Farkad, Mylonakis Eleftherios, Khoo Chen Ai, Peleg Anton Y., Impact of a Cross-Kingdom Signaling Molecule of Candida albicans on Acinetobacter baumannii Physiology, 10.1128/aac.01540-15
  57. Kramer Rolf, Sauer-Heilborn Annette, Welte Tobias, Guzman Carlos A., Abraham Wolf-Rainer, Höfle Manfred G., Cohort Study of Airway Mycobiome in Adult Cystic Fibrosis Patients: Differences in Community Structure between Fungi and Bacteria Reveal Predominance of Transient Fungal Elements, 10.1128/jcm.01094-15
  58. Krause R, Halwachs B, Thallinger GG, Klymiuk I, Gorkiewicz G, Hoenigl M, Prattes J, Valentin T, Heidrich K, Buzina W, Salzer HJ, Rabensteiner J, Prüller F, Raggam RB, Meinitzer A, Moissl-Eichinger C, Högenauer C, Quehenberger F, Kashofer K, Zollner-Schwetz I (2016) Characterisation of Candida within the mycobiome/microbiome of the lower respiratory tract of ICU patients. PLoS One 11:e0155033
  59. Krause Robert, Moissl-Eichinger Christine, Halwachs Bettina, Gorkiewicz Gregor, Berg Gabriele, Valentin Thomas, Prattes Jürgen, Högenauer Christoph, Zollner-Schwetz Ines, Mycobiome in the Lower Respiratory Tract – A Clinical Perspective, 10.3389/fmicb.2016.02169
  60. Leung Marcus H. Y., Chan Kelvin C. K., Lee Patrick K. H., Skin fungal community and its correlation with bacterial community of urban Chinese individuals, 10.1186/s40168-016-0192-z
  61. Liguori Giuseppina, Lamas Bruno, Richard Mathias L., Brandi Giovanni, da Costa Gregory, Hoffmann Thomas W., Di Simone Massimo Pierluigi, Calabrese Carlo, Poggioli Gilberto, Langella Philippe, Campieri Massimo, Sokol Harry, Fungal Dysbiosis in Mucosa-associated Microbiota of Crohn’s Disease Patients, 10.1093/ecco-jcc/jjv209
  62. Lindsay Allia K., Hogan Deborah A., Candida albicans: Molecular interactions with Pseudomonas aeruginosa and Staphylococcus aureus, 10.1016/j.fbr.2014.10.002
  63. Liu X.-Z., Wang Q.-M., Göker M., Groenewald M., Kachalkin A.V., Lumbsch H.T., Millanes A.M., Wedin M., Yurkov A.M., Boekhout T., Bai F.-Y., Towards an integrated phylogenetic classification of the Tremellomycetes, 10.1016/j.simyco.2015.12.001
  64. Martin Isabella W., Tonner Rita, Trivedi Julie, Miller Heather, Lee Richard, Liang Xinglun, Rotello Leo, Isenbergh Elena, Anderson Jennifer, Perl Trish, Zhang Sean X., Saccharomyces boulardii probiotic-associated fungemia: questioning the safety of this preventive probiotic's use, 10.1016/j.diagmicrobio.2016.12.004
  65. Mason K. L., Erb Downward J. R., Mason K. D., Falkowski N. R., Eaton K. A., Kao J. Y., Young V. B., Huffnagle G. B., Candida albicans and Bacterial Microbiota Interactions in the Cecum during Recolonization following Broad-Spectrum Antibiotic Therapy, 10.1128/iai.00449-12
  66. McFarland Lynne V, Systematic review and meta-analysis ofSaccharomyces boulardiiin adult patients, 10.3748/wjg.v16.i18.2202
  67. Miranda L.N., van der Heijden I.M., Costa S.F., Sousa A.P.I., Sienra R.A., Gobara S., Santos C.R., Lobo R.D., Pessoa V.P., Levin A.S., Candida colonisation as a source for candidaemia, 10.1016/j.jhin.2009.02.009
  68. Morales D. K., Grahl N., Okegbe C., Dietrich L. E. P., Jacobs N. J., Hogan D. A., Control of Candida albicans Metabolism and Biofilm Formation by Pseudomonas aeruginosa Phenazines, 10.1128/mbio.00526-12
  69. Moyes David L., Naglik Julian R., The Mycobiome: Influencing IBD Severity, 10.1016/j.chom.2012.05.009
  70. Mukherjee Pranab K., Chandra Jyotsna, Retuerto Mauricio, Sikaroodi Masoumeh, Brown Robert E., Jurevic Richard, Salata Robert A., Lederman Michael M., Gillevet Patrick M., Ghannoum Mahmoud A., Oral Mycobiome Analysis of HIV-Infected Patients: Identification of Pichia as an Antagonist of Opportunistic Fungi, 10.1371/journal.ppat.1003996
  71. Mukherjee Pranab K., Sendid Boualem, Hoarau Gautier, Colombel Jean-Frédéric, Poulain Daniel, Ghannoum Mahmoud A., Mycobiota in gastrointestinal diseases, 10.1038/nrgastro.2014.188
  72. Murdoch Travis B., Xu Wei, Stempak Joanne M., Landers Carol, Targan Stephan R., Rotter Jerome I., Silverberg Mark S., Pattern recognition receptor and autophagy gene variants are associated with development of antimicrobial antibodies in Crohnʼs disease : , 10.1002/ibd.22884
  73. Neville B. Anne, d'Enfert Christophe, Bougnoux Marie-Elisabeth, Candida albicanscommensalism in the gastrointestinal tract, 10.1093/femsyr/fov081
  74. Nguyen LD, Viscogliosi E, Delhaes L (2015) The lung mycobiome: an emerging field of the human respiratory microbiome. Front Microbiol 6:89
  75. Nilsson R. Henrik, Ryberg Martin, Kristiansson Erik, Abarenkov Kessy, Larsson Karl-Henrik, Kõljalg Urmas, Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective, 10.1371/journal.pone.0000059
  76. Noverr M. C., Huffnagle G. B., Regulation of Candida albicans Morphogenesis by Fatty Acid Metabolites, 10.1128/iai.72.11.6206-6210.2004
  77. Noverr M. C., Phare S. M., Toews G. B., Coffey M. J., Huffnagle G. B., Pathogenic Yeasts Cryptococcus neoformans and Candida albicans Produce Immunomodulatory Prostaglandins, 10.1128/iai.69.5.2957-2963.2001
  78. Noverr M. C., Noggle R. M., Toews G. B., Huffnagle G. B., Role of Antibiotics and Fungal Microbiota in Driving Pulmonary Allergic Responses, 10.1128/iai.72.9.4996-5003.2004
  79. Noverr M. C., Falkowski N. R., McDonald R. A., McKenzie A. N., Huffnagle G. B., Development of Allergic Airway Disease in Mice following Antibiotic Therapy and Fungal Microbiota Increase: Role of Host Genetics, Antigen, and Interleukin-13, 10.1128/iai.73.1.30-38.2005
  80. Nucci Marcio, Anaissie Elias, Revisiting the Source of Candidemia: Skin or Gut?, 10.1086/323759
  81. Park HK, Ha MH, Park SG, Kim MN, Kim BJ, Kim W (2012) Characterization of the fungal microbiota (mycobiome) in healthy and dandruff-afflicted human scalps. PLoS One 7:e32847
  82. Peleg A. Y., Tampakakis E., Fuchs B. B., Eliopoulos G. M., Moellering R. C., Mylonakis E., Prokaryote-eukaryote interactions identified by using Caenorhabditis elegans, 10.1073/pnas.0805048105
  83. Peleg Anton Y., Hogan Deborah A., Mylonakis Eleftherios, Medically important bacterial–fungal interactions, 10.1038/nrmicro2313
  84. Peters B. M., Palmer G. E., Nash A. K., Lilly E. A., Fidel P. L., Noverr M. C., Deepe G. S., Fungal Morphogenetic Pathways Are Required for the Hallmark Inflammatory Response during Candida albicans Vaginitis, 10.1128/iai.01417-13
  85. Pfaller Michael, Neofytos Dionissios, Diekema Daniel, Azie Nkechi, Meier-Kriesche Herwig-Ulf, Quan Shun-Ping, Horn David, Epidemiology and outcomes of candidemia in 3648 patients: data from the Prospective Antifungal Therapy (PATH Alliance®) registry, 2004–2008, 10.1016/j.diagmicrobio.2012.10.003
  86. Prohic Asja, Ozegovic Ladislav, Malassezia species isolated from lesional and non-lesional skin in patients with pityriasis versicolor, 10.1111/j.1439-0507.2006.01310.x
  87. Richard Mathias L., Lamas Bruno, Liguori Giuseppina, Hoffmann Thomas W., Sokol Harry, Gut Fungal Microbiota : The Yin and Yang of Inflammatory Bowel Disease, 10.1097/mib.0000000000000261
  88. Roetzer Andreas, Gabaldón Toni, Schüller Christoph, From Saccharomyces cerevisiae to Candida glabrata in a few easy steps: important adaptations for an opportunistic pathogen : Candida glabrata stress response, 10.1111/j.1574-6968.2010.02102.x
  89. Roth R R, James W D, Microbial Ecology of the Skin, 10.1146/annurev.mi.42.100188.002301
  90. Samuelsen Anne Berit C., Schrezenmeir Jürgen, Knutsen Svein H., Effects of orally administered yeast-derived beta-glucans: A review, 10.1002/mnfr.201300338
  91. Saunte DM, Tarazooie B, Arendrup MC, de Hoog GS (2012) Black yeast-like fungi in skin and nail: it probably matters. Mycoses 55:161–167
  92. Schommer Nina N., Gallo Richard L., Structure and function of the human skin microbiome, 10.1016/j.tim.2013.10.001
  93. Seibold F., Stich O., Hufnagl R., Kamil S., Scheurlen M., Anti-Saccharomyces cerevisiae Antibodies in Inflammatory Bowel Disease: a Family Study, 10.1080/003655201750065960
  94. Shirtliff Mark E., Peters Brian M., Jabra-Rizk Mary Ann, Cross-kingdom interactions:Candida albicansand bacteria, 10.1111/j.1574-6968.2009.01668.x
  95. Sobel Jack D, Vulvovaginal candidosis, 10.1016/s0140-6736(07)60917-9
  96. Sokol Harry, Leducq Valentin, Aschard Hugues, Pham Hang-Phuong, Jegou Sarah, Landman Cecilia, Cohen David, Liguori Giuseppina, Bourrier Anne, Nion-Larmurier Isabelle, Cosnes Jacques, Seksik Philippe, Langella Philippe, Skurnik David, Richard Mathias L, Beaugerie Laurent, Fungal microbiota dysbiosis in IBD, 10.1136/gutjnl-2015-310746
  97. Standaert–Vitse Annie, Jouault Thierry, Vandewalle Peggy, Mille Céline, Seddik Mimouna, Sendid Boualem, Mallet Jean–Maurice, Colombel Jean–Frédéric, Poulain Daniel, Candida albicans Is an Immunogen for Anti–Saccharomyces cerevisiae Antibody Markers of Crohn’s Disease, 10.1053/j.gastro.2006.02.009
  98. Stier Heike, Ebbeskotte Veronika, Gruenwald Joerg, Immune-modulatory effects of dietary Yeast Beta-1,3/1,6-D-glucan, 10.1186/1475-2891-13-38
  99. Strati Francesco, Di Paola Monica, Stefanini Irene, Albanese Davide, Rizzetto Lisa, Lionetti Paolo, Calabrò Antonio, Jousson Olivier, Donati Claudio, Cavalieri Duccio, De Filippo Carlotta, Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract, 10.3389/fmicb.2016.01227
  100. Sugita Takashi, Yamazaki Takashi, Makimura Koichi, Cho Otomi, Yamada Shin, Ohshima Hiroshi, Mukai Chiaki, Comprehensive analysis of the skin fungal microbiota of astronauts during a half-year stay at the International Space Station, 10.1093/mmy/myv121
  101. Suhr M. J., Hallen-Adams H. E., The human gut mycobiome: pitfalls and potentials--a mycologists perspective, 10.3852/15-147
  102. Suhr M.J., Banjara N., Hallen-Adams H.E., Sequence-based methods for detecting and evaluating the human gut mycobiome, 10.1111/lam.12539
  103. Tang Jie, Iliev Iliyan D., Brown Jordan, Underhill David M., Funari Vincent A., Mycobiome: Approaches to analysis of intestinal fungi, 10.1016/j.jim.2015.04.004
  104. Tati Swetha, Davidow Peter, McCall Andrew, Hwang-Wong Elizabeth, Rojas Isolde G., Cormack Brendan, Edgerton Mira, Candida glabrata Binding to Candida albicans Hyphae Enables Its Development in Oropharyngeal Candidiasis, 10.1371/journal.ppat.1005522
  105. Tipton Laura, Ghedin Elodie, Morris Alison, The lung mycobiome in the next-generation sequencing era, 10.1080/21505594.2016.1235671
  106. Tremaroli Valentina, Bäckhed Fredrik, Functional interactions between the gut microbiota and host metabolism, 10.1038/nature11552
  107. Tyc Katarzyna M., Herwald Sanna E., Hogan Jennifer A., Pierce Jessica V., Klipp Edda, Kumamoto Carol A., The game theory of Candida albicans colonization dynamics reveals host status-responsive gene expression, 10.1186/s12918-016-0268-1
  108. Underhill DM, Iliev ID (2013) Fungal mycobiome as probiotics, diagnostics and therapeutics. International Application No. PCT/US2013/038466
  109. Underhill David M., Iliev Iliyan D., The mycobiota: interactions between commensal fungi and the host immune system, 10.1038/nri3684
  110. Underhill David M., Pearlman Eric, Immune Interactions with Pathogenic and Commensal Fungi: A Two-Way Street, 10.1016/j.immuni.2015.10.023
  111. van Woerden Hugo Cornelis, Gregory Clive, Brown Richard, Marchesi Julian Roberto, Hoogendoorn Bastiaan, Matthews Ian Price, Differences in fungi present in induced sputum samples from asthma patients and non-atopic controls: a community based case control study, 10.1186/1471-2334-13-69
  112. Wade William G., The oral microbiome in health and disease, 10.1016/j.phrs.2012.11.006
  113. Wang Z. K., Yang Y. S., Stefka A. T., Sun G., Peng L. H., Review article: fungal microbiota and digestive diseases, 10.1111/apt.12665
  114. Wheeler Matthew L., Limon Jose J., Bar Agnieszka S., Leal Christian A., Gargus Matthew, Tang Jie, Brown Jordan, Funari Vincent A., Wang Hanlin L., Crother Timothy R., Arditi Moshe, Underhill David M., Iliev Iliyan D., Immunological Consequences of Intestinal Fungal Dysbiosis, 10.1016/j.chom.2016.05.003
  115. White Bryan A., Creedon Douglas J., Nelson Karen E., Wilson Brenda A., The vaginal microbiome in health and disease, 10.1016/j.tem.2011.06.001
  116. World Health Organisation (2017) http://www.who.int/medicines/publications/WHO-PPL-Short_Summary_25Feb-ET_NM_WHO.pdf?ua=1
  117. Xu H., Sobue T., Thompson A., Xie Z., Poon K., Ricker A., Cervantes J., Diaz P. I., Dongari-Bagtzoglou A., Streptococcal co-infection augmentsCandidapathogenicity by amplifying the mucosal inflammatory response : Candida-streptococcal synergy in oral thrush, 10.1111/cmi.12216
  118. Young G., Resca H.G., Sullivan M.T., The Yeasts of the Normal Mouth and Their Relation to Salivary Acidity, 10.1177/00220345510300031901