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Proteomics of nonmodel plant species

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Champagne, Antoine [UCL] Boutry, Marc [UCL]

Until recently, large scale proteomic investigations in the plant field have only been possible for a few model species for which the whole genome sequence had been fully determined. In contrast, for many other species with a strong economic interest as sources of human food and animal feed, as well as industrial and pharmacological molecules, little was known about their genome sequence and identifying the proteome in these species was still considered challenging. However, progress has been made as a result of several recent advances in proteomics tools, e.g. in MS technology and data search programs, and the increasing availability of genomic and cDNA sequences from various species. Moreover, next-generation sequencing technologies now make it possible to rapidly determine, at a reasonable cost, the genome or RNA sequence of species not currently considered as models, thus considerably expanding the plant sequence databases. This review will show how these advances make it possible to identify a large set of proteins, even for species for which few sequences are currently available.

Document type Article de périodique (Journal article) – Synthèse de littérature
Access type Accès interdit
Publication date 2013
Language Anglais
Journal information "Proteomics" - Vol. 13, no. 3-4, p. 663-673 (February 2013)
Peer reviewed yes
Publisher Wiley - V C H Verlag GmbH & Co. KGaA ((Germany) Weinheim)
issn 1615-9853
e-issn 1615-9861
Publication status Publié
Keywords Complex sample fractionation ; Next generation sequencing ; Nonmodel plants ; Plant proteomics ; Proteogenomics
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Bibliographic reference Champagne, Antoine ; Boutry, Marc. Proteomics of nonmodel plant species. In: Proteomics, Vol. 13, no. 3-4, p. 663-673 (February 2013)
Permanent URL http://hdl.handle.net/2078/120957