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Analysis of network architecture reveals phylogenetic constraints on mycorrhizal specificity in the genus Orchis (Orchidaceae)

Bibliographic reference Jacquemyn, Hans ; Merckx, Vincent ; Brys, Rein ; Tyteca, Daniel ; Cammue, Bruno P. A. ; et. al. Analysis of network architecture reveals phylogenetic constraints on mycorrhizal specificity in the genus Orchis (Orchidaceae). In: New Phytologist, Vol. 192, no. 2, p. 518-528 (2011)
Permanent URL http://hdl.handle.net/2078.1/89393
  1. Abadie Jean-Claude, Püttsepp Ülle, Gebauer Gerhard, Faccio Antonella, Bonfante Paola, Selosse Marc-André, Cephalanthera longifolia (Neottieae, Orchidaceae) is mixotrophic: a comparative study between green and nonphotosynthetic individuals, 10.1139/b06-101
  2. Almeida-Neto Mário, Guimarães Paulo, Guimarães Paulo R., Loyola Rafael D., Ulrich Werner, A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement, 10.1111/j.0030-1299.2008.16644.x
  3. Barrett C. F., Freudenstein J. V., Taylor D. L., Koljalg U., Rangewide analysis of fungal associations in the fully mycoheterotrophic Corallorhiza striata complex (Orchidaceae) reveals extreme specificity on ectomycorrhizal Tomentella (Thelephoraceae) across North America, 10.3732/ajb.0900230
  4. Bascompte J., Structure and Dynamics of Ecological Networks, 10.1126/science.1194255
  5. Bascompte J., Jordano P., Melian C. J., Olesen J. M., The nested assembly of plant-animal mutualistic networks, 10.1073/pnas.1633576100
  6. BATEMAN RICHARD M., HOLLINGSWORTH PETER M., PRESTON JILLIAN, YI-BO LUO, PRIDGEON ALEC M., CHASE MARK W., Molecular phylogenetics and evolution of Orchidinae and selected Habenariinae (Orchidaceae), 10.1046/j.1095-8339.2003.00157.x
  7. Bersier Louis-Félix, Kehrli Patrik, The signature of phylogenetic constraints on food-web structure, 10.1016/j.ecocom.2007.06.013
  8. Blomberg Simon P., Garland Theodore, Ives Anthony R., TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE, 10.1111/j.0014-3820.2003.tb00285.x
  9. Bonnet Eric, Van de Peer Yves, zt: A Software Tool for Simple and Partial Mantel Tests, 10.18637/jss.v007.i10
  10. Bruns T. D., Host Specificity in Ectomycorrhizal Communities: What Do the Exceptions Tell Us?, 10.1093/icb/42.2.352
  11. Chao Anne, Colwell Robert K., Lin Chih-Wei, Gotelli Nicholas J., Sufficient sampling for asymptotic minimum species richness estimators, 10.1890/07-2147.1
  12. Ciardo D. E., Schar G., Bottger E. C., Altwegg M., Bosshard P. P., Internal Transcribed Spacer Sequencing versus Biochemical Profiling for Identification of Medically Important Yeasts, 10.1128/jcm.44.1.77-84.2006
  13. Drummond AJ Ashton B Cheung M Heled J Kearse M Moir R Stones-Havas S Thierer T Wilson A 2009 Geneious v4.7 http://www.geneious.com/
  14. Drummond Alexei J, Ho Simon Y. W, Phillips Matthew J, Rambaut Andrew, Relaxed Phylogenetics and Dating with Confidence, 10.1371/journal.pbio.0040088
  15. Drummond Alexei J, Rambaut Andrew, BEAST: Bayesian evolutionary analysis by sampling trees, 10.1186/1471-2148-7-214
  16. Fortuna, Journal of Animal Ecology, 79, 811 (2010)
  17. GUIMARAESJR P, GUIMARAES P, Improving the analyses of nestedness for large sets of matrices, 10.1016/j.envsoft.2006.04.002
  18. Guimerà Roger, Nunes Amaral Luís A., Functional cartography of complex metabolic networks, 10.1038/nature03288
  19. Ives A. R., Godfray H. C. J., Phylogenetic Analysis of Trophic Associations, 10.1086/505157
  20. Jacquemyn Hans, Brys Rein, Cammue Bruno P. A., Honnay Olivier, Lievens Bart, Mycorrhizal associations and reproductive isolation in three closely related Orchis species, 10.1093/aob/mcq248
  21. JACQUEMYN HANS, HONNAY OLIVIER, CAMMUE BRUNO P. A., BRYS REIN, LIEVENS BART, Low specificity and nested subset structure characterize mycorrhizal associations in five closely related species of the genus Orchis : ORCHID MYCORRHIZAL ASSOCIATIONS, 10.1111/j.1365-294x.2010.04785.x
  22. Julou Thomas, Burghardt Bastian, Gebauer Gerhard, Berveiller Daniel, Damesin Claire, Selosse Marc-André, Mixotrophy in orchids: insights from a comparative study of green individuals and nonphotosynthetic individuals of Cephalanthera damasonium, 10.1111/j.1469-8137.2005.01364.x
  23. Kembel S. W., Cowan P. D., Helmus M. R., Cornwell W. K., Morlon H., Ackerly D. D., Blomberg S. P., Webb C. O., Picante: R tools for integrating phylogenies and ecology, 10.1093/bioinformatics/btq166
  24. Kretzschmar, The Orchid genera Anacamptis, Orchis, Neotinea (2007)
  25. Lewinsohn Thomas M., Inácio Prado Paulo, Jordano Pedro, Bascompte Jordi, M. Olesen Jens, Structure in plant-animal interaction assemblages, 10.1111/j.0030-1299.2006.14583.x
  26. Lievens Bart, Brouwer Margreet, Vanachter Alfons C.R.C., Lévesque C.André, Cammue Bruno P.A., Thomma Bart P.H.J., Design and development of a DNA array for rapid detection and identification of multiple tomato vascular wilt pathogens, 10.1016/s0378-1097(03)00352-5
  27. Lievens Bart, Claes Loes, Vanachter Alfons C.R.C., Cammue Bruno P.A., Thomma Bart P.H.J., Detecting single nucleotide polymorphisms using DNA arrays for plant pathogen diagnosis, 10.1111/j.1574-6968.2005.00074.x
  28. Lievens Bart, van Kerckhove Stefan, Justé Annelies, Cammue Bruno P.A., Honnay Olivier, Jacquemyn Hans, From extensive clone libraries to comprehensive DNA arrays for the efficient and simultaneous detection and identification of orchid mycorrhizal fungi, 10.1016/j.mimet.2009.11.004
  29. McCormick, EcologicalMonographs, 79, 619 (2009)
  30. Newman M. E. J., Girvan M., Finding and evaluating community structure in networks, 10.1103/physreve.69.026113
  31. NIELSEN ANDERS, BASCOMPTE JORDI, Ecological networks, nestedness and sampling effort, 10.1111/j.1365-2745.2007.01271.x
  32. Nilsson, Evolutionary Bioinformatics, 4, 193 (2008)
  33. Olesen J. M., Bascompte J., Dupont Y. L., Jordano P., The modularity of pollination networks, 10.1073/pnas.0706375104
  34. Posada D., jModelTest: Phylogenetic Model Averaging, 10.1093/molbev/msn083
  35. Rasmussen Hanne N., Terrestrial orchids : From seed to mycotrophic plant, ISBN:9780511525452, 10.1017/cbo9780511525452
  36. Rasmussen Hanne N., Rasmussen Finn N., Orchid mycorrhiza: implications of a mycophagous life style, 10.1111/j.1600-0706.2008.17116.x
  37. Rezende Enrico L., Lavabre Jessica E., Guimarães Paulo R., Jordano Pedro, Bascompte Jordi, Non-random coextinctions in phylogenetically structured mutualistic networks, 10.1038/nature05956
  38. Roche S. A., Carter R. J., Peakall R., Smith L. M., Whitehead M. R., Linde C. C., A narrow group of monophyletic Tulasnella (Tulasnellaceae) symbiont lineages are associated with multiple species of Chiloglottis (Orchidaceae): Implications for orchid diversity, 10.3732/ajb.1000049
  39. Schatz B., Geoffroy A., Dainat B., Bessiere J.-M., Buatois B., Hossaert-McKey M., Selosse M.-A., A case study of modified interactions with symbionts in a hybrid mediterranean orchid, 10.3732/ajb.0900303
  40. SHEFFERSON RICHARD P., COWDEN CHARLES C., MCCORMICK MELISSA K., YUKAWA TOMOHISA, OGURA-TSUJITA YUKI, HASHIMOTO TOSHIMASA, Evolution of host breadth in broad interactions: mycorrhizal specificity in East Asian and North American rattlesnake plantains (Goodyera spp.) and their fungal hosts : MYCORRHIZAL HOST BREADTH EVOLUTION, 10.1111/j.1365-294x.2010.04693.x
  41. Shefferson R. P., Kull T., Tali K., Mycorrhizal interactions of orchids colonizing Estonian mine tailings hills, 10.3732/ajb.95.2.156
  42. Shefferson Richard P., Taylor D. Lee, Weiß Michael, Garnica Sigisfredo, McCormick Melissa K., Adams Seth, Gray Hope M., McFarland Jack W., Kull Tiiu, Tali Kadri, Yukawa Tomohisa, Kawahara Takayuki, Miyoshi Kazumitsu, Lee Yung-I, THE EVOLUTIONARY HISTORY OF MYCORRHIZAL SPECIFICITY AMONG LADY'S SLIPPER ORCHIDS, 10.1111/j.1558-5646.2007.00112.x
  43. Smith, Mycorrhizal symbiosis (2008)
  44. Stamatakis Alexandros, RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models, 10.1093/bioinformatics/btl446
  45. SWARTS NIGEL D., SINCLAIR ELIZABETH A., FRANCIS ANTHONY, DIXON KINGSLEY W., Ecological specialization in mycorrhizal symbiosis leads to rarity in an endangered orchid : MYCORRHIZAL SPECIALIZATION IN CALADENIA, 10.1111/j.1365-294x.2010.04736.x
  46. Tamura K., Dudley J., Nei M., Kumar S., MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0, 10.1093/molbev/msm092
  47. Taylor D. L., Bruns T. D., Szaro T. M., Hodges S. A., Divergence in mycorrhizal specialization within Hexalectris spicata (Orchidaceae), a nonphotosynthetic desert orchid, 10.3732/ajb.90.8.1168
  48. Taylor D. Lee, McCormick Melissa K., Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas, 10.1111/j.1469-8137.2007.02320.x
  49. Thebault E., Fontaine C., Stability of Ecological Communities and the Architecture of Mutualistic and Trophic Networks, 10.1126/science.1188321
  50. Vacher Corinne, Piou Dominique, Desprez-Loustau Marie-Laure, Architecture of an Antagonistic Tree/Fungus Network: The Asymmetric Influence of Past Evolutionary History, 10.1371/journal.pone.0001740
  51. WARCUP J. H., THE MYCORRHIZAL RELATIONSHIPS OF AUSTRALIAN ORCHIDS, 10.1111/j.1469-8137.1981.tb03208.x
  52. Waterman Richard J., Bidartondo Martin I., Stofberg Jaco, Combs Julie K., Gebauer Gerhard, Savolainen Vincent, Barraclough Timothy G., Pauw Anton, The Effects of Above- and Belowground Mutualisms on Orchid Speciation and Coexistence, 10.1086/657955
  53. Yukawa T., Ogura-Tsujita Y., Shefferson R. P., Yokoyama J., Mycorrhizal diversity in Apostasia (Orchidaceae) indicates the origin and evolution of orchid mycorrhiza, 10.3732/ajb.0900101