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A review of ecological models for brown trout: towards a new demogenetic model

Bibliographic reference Frank, Béatrice ; Baret, Philippe ; Piccolo, John. A review of ecological models for brown trout: towards a new demogenetic model. In: Ecology of Freshwater Fish, Vol. 20, no. 2, p. 167-198 (2011)
Permanent URL http://hdl.handle.net/2078.1/74179
  1. Ahmadi-Nedushan Behrouz, St-Hilaire André, Bérubé Michel, Robichaud Élaine, Thiémonge Nathalie, Bobée Bernard, A review of statistical methods for the evaluation of aquatic habitat suitability for instream flow assessment, 10.1002/rra.918
  2. Alfredsen Knut, Borsanyi Peter, Harby Atle, Fjeldstad Hans-Petter, Wersland Sten-Enok, Application of habitat modelling in river rehabilitation and artificial habitat design, 10.1051/hydro:2004007
  3. Allendorf, Conservation and the genetics of populations (2007)
  4. Almodóvar Ana, Nicola Graciela G., Elvira Benigno, Spatial Variation in Brown Trout Production: The Role of Environmental Factors, 10.1577/t05-189.1
  5. Anderson Kurt E., Paul Andrew J., McCauley Edward, Jackson Leland J., Post John R., Nisbet Roger M., Instream flow needs in streams and rivers: the importance of understanding ecological dynamics, 10.1890/1540-9295(2006)4[309:ifnisa]2.0.co;2
  6. ANDERSON COREY DEVIN, EPPERSON BRYAN K., FORTIN MARIE-JOSÉE, HOLDEREGGER ROLF, JAMES PATRICK M. A., ROSENBERG MICHAEL S., SCRIBNER KIM T., SPEAR STEPHEN, Considering spatial and temporal scale in landscape-genetic studies of gene flow : SCALE IN LANDSCAPE GENETICS, 10.1111/j.1365-294x.2010.04757.x
  7. Angers Bernard, Magnan Pierre, Plante Michel, Bernatchez Louis, Canonical correspondence analysis for estimating spatial and environmental effects on microsatellite gene diversity in brook charr (Salvelinus fontinalis), 10.1046/j.1365-294x.1999.00669.x
  8. Antunes A., Faria R., Johnson W. E., Guyomard R., Alexandrino P., Life on the Edge: The Long-Term Persistence and Contrasting Spatial Genetic Structure of Distinct Brown Trout Life Histories at Their Ecological Limits, 10.1093/jhered/esj014
  9. Apostolidis A, Karakousis Y, Triantaphyllidis C, Genetic divergence and phylogenetic relationships among Salmo trutta L. (brown trout) populations from Greece and other European countries, 10.1038/hdy.1996.80
  10. APOSTOLIDIS APOSTOLOS P., MADEIRA MARIA-JOSE, HANSEN MICHAEL M., MACHORDOM ANNIE, Genetic structure and demographic history of brown trout (Salmo trutta) populations from the southern Balkans, 10.1111/j.1365-2427.2008.01988.x
  11. Araneda Cristian, Neira Roberto, Iturra Patricia, Identification of a dominant SCAR marker associated with colour traits in Coho salmon (Oncorhynchus kisutch), 10.1016/j.aquaculture.2005.02.028
  12. Armstrong J.D, Kemp P.S, Kennedy G.J.A, Ladle M, Milner N.J, Habitat requirements of Atlantic salmon and brown trout in rivers and streams, 10.1016/s0165-7836(02)00160-1
  13. Aurelle Didier, Berrebi Patrick, Microsatellite markers and management of brown trout Salmo trutta fario populations in southwestern France, 10.1186/1297-9686-30-s1-s75
  14. AYLLON F., MORAN P., GARCIA-VAZQUEZ E., Maintenance of a small anadromous subpopulation of brown trout (Salmo trutta L.) by straying, 10.1111/j.1365-2427.2005.01486.x
  15. Ayllón D., Almodóvar A., Nicola G.G., Elvira B., Modelling brown trout spatial requirements through physical habitat simulations, 10.1002/rra.1315
  16. Balkenhol Niko, Gugerli Felix, Cushman Sam A., Waits Lisette P., Coulon Aurélie, Arntzen J. W., Holderegger Rolf, Wagner Helene H., , Identifying future research needs in landscape genetics: where to from here?, 10.1007/s10980-009-9334-z
  17. Balkenhol Niko, Waits Lisette P., Dezzani Raymond J., Statistical approaches in landscape genetics: an evaluation of methods for linking landscape and genetic data, 10.1111/j.1600-0587.2009.05807.x
  18. Balloux F., EASYPOP (Version 1.7): A Computer Program for Population Genetics Simulations, 10.1093/jhered/92.3.301
  19. Baran Philippe, Delacoste Marc, Dauba Francis, Lascaux J.-Marc, Belaud Alain, Lek Sovan, Effects of reduced flow on brown trout (Salmo trutta L.) populations downstream dams in french pyrenees, 10.1002/rrr.3450100226
  20. Baran Philippe, Lek Sovan, Delacoste Marc, Belaud Alain, Stochastic models that predict trout population density or biomass on a mesohabitat scale, 10.1007/bf00028502
  21. BARNARD S., WYATT R. J., MILNER N. J., Le développement des modèles d'habitat pour les salmonidés d'eau courante et leur application à la gestion piscicole, 10.1051/kmae:1995042
  22. Bartholow John M, Sensitivity of a salmon population model to alternative formulations and initial conditions, 10.1016/0304-3800(95)00108-5
  23. Beaumont, Genetics, 162, 2025 (2002)
  24. Beerli P., Comparison of Bayesian and maximum-likelihood inference of population genetic parameters, 10.1093/bioinformatics/bti803
  25. Beerli P., Felsenstein J., Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach, 10.1073/pnas.081068098
  26. Belaud A., Chaveroche P., Lim P., Sabaton C., Probability-of-use curves applied to brown trout (Salmo trutta fario L.) in rivers of southern France, 10.1002/rrr.3450030130
  27. Belkhir, GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations (2004)
  28. Bell V.A., Elliott J.M., Moore R.J., Modelling the effects of drought on the population of brown trout in Black Brows Beck, 10.1016/s0304-3800(99)00209-4
  29. Bernatchez Louis, THE EVOLUTIONARY HISTORY OF BROWN TROUT (SALMO TRUTTA L.) INFERRED FROM PHYLOGEOGRAPHIC, NESTED CLADE, AND MISMATCH ANALYSES OF MITOCHONDRIAL DNA VARIATION, 10.1111/j.0014-3820.2001.tb01300.x
  30. Berthier, Genetics, 160, 741 (2002)
  31. BERTORELLE G., BENAZZO A., MONA S., ABC as a flexible framework to estimate demography over space and time: some cons, many pros : THE ABC REVOLUTION IN NINE STEPS, 10.1111/j.1365-294x.2010.04690.x
  32. Beverton, On the dynamics of exploited fish populations, vol. XIX of II (1957)
  33. Bolker, Ecological models and data in R (2008)
  34. Booker D. J., Dunbar M. J., Application of physical habitat simulation(PHABSIM) modelling to modified urban river channels, 10.1002/rra.742
  35. Booker D.J, Dunbar M.J, Ibbotson A, Predicting juvenile salmonid drift-feeding habitat quality using a three-dimensional hydraulic-bioenergetic model, 10.1016/j.ecolmodel.2004.02.006
  36. Borg , D. Roy , A. 2006 Physical habitat simulation predicts good news for Pretty Valley aquatic biota
  37. Borsuk Mark E., Reichert Peter, Peter Armin, Schager Eva, Burkhardt-Holm Patricia, Assessing the decline of brown trout (Salmo trutta) in Swiss rivers using a Bayesian probability network, 10.1016/j.ecolmodel.2005.07.006
  38. Bouza C., Arias J., Castro J., Sanchez L., Martinez P., Genetic structure of brown trout, Salmo trutta L., at the southern limit of the distribution range of the anadromous form, 10.1046/j.1365-294x.1999.00794.x
  39. Bouza C., Castro J., Sanchez L., Martinez P., Allozymic evidence of parapatric differentiation of brown trout (Salmo trutta L.) within an Atlantic river basin of the Iberian Peninsula, 10.1046/j.1365-294x.2001.01272.x
  40. Bovee , K. 1982 A guide to stream habitat analysis using the instream flow incremental methodology
  41. Bovee, U.S. Fish and Wildlife Service, 86 (1986)
  42. Bovee , K. Lamb , B. Bartholow , J. Stalnaker , C. Taylor , J. Henriksen , J. 1998 Stream habitat analysis using the instream flow incremental methodology
  43. Braaten Patrick J., Dey Paul D., Annear Thomas C., Development and evaluation of bioenergetic-based habitat suitability criteria for trout, 10.1002/(sici)1099-1646(199707)13:4<345::aid-rrr445>3.0.co;2-9
  44. Brännäs Eva, Jonsson Sara, Lundqvist Hans, Influence of food abundance on individual behaviour strategy and growth rate in juvenile brown trout (Salmo trutta), 10.1139/z03-047
  45. Breckling Broder, Individual-Based Modelling Potentials and Limitations, 10.1100/tsw.2002.179
  46. Breckling Broder, Müller Felix, Reuter Hauke, Hölker Franz, Fränzle Otto, Emergent properties in individual-based ecological models—introducing case studies in an ecosystem research context, 10.1016/j.ecolmodel.2005.02.008
  47. Breckling Broder, Middelhoff Ulrike, Reuter Hauke, Individual-based models as tools for ecological theory and application: Understanding the emergence of organisational properties in ecological systems, 10.1016/j.ecolmodel.2005.10.005
  48. Broquet Thomas, Petit Eric J., Molecular Estimation of Dispersal for Ecology and Population Genetics, 10.1146/annurev.ecolsys.110308.120324
  49. BRUGGEMAN DOUGLAS J., WIEGAND THORSTEN, FERNÁNDEZ NÉSTOR, The relative effects of habitat loss and fragmentation on population genetic variation in the red-cockaded woodpecker (Picoides borealis) : FRAGMENTATION AND GENETIC VARIATION, 10.1111/j.1365-294x.2010.04659.x
  50. Buckland S. T., Elston D. A., Empirical Models for the Spatial Distribution of Wildlife, 10.2307/2404188
  51. Buckland S.T., Newman K.B., Thomas L., Koesters N.B., State-space models for the dynamics of wild animal populations, 10.1016/j.ecolmodel.2003.08.002
  52. Buckland Stephen T., Newman Ken B., Fernández Carmen, Thomas Len, Harwood John, Embedding Population Dynamics Models in Inference, 10.1214/088342306000000673
  53. Budy P., Thiede G. P., McHugh P., Hansen E. S., Wood J., Exploring the relative influence of biotic interactions and environmental conditions on the abundance and distribution of exotic brown trout (Salmo trutta) in a high mountain stream, 10.1111/j.1600-0633.2008.00306.x
  54. Burkhardt-Holm Patricia, Decline of brown trout (Salmo trutta) in Switzerland – How to assess potential causes in a multi-factorial cause–effect relationship, 10.1016/j.marenvres.2008.02.055
  55. Butts Carter T., network: A Package for Managing Relational Data inR, 10.18637/jss.v024.i02
  56. Butts, Network: classes for relational data (2008)
  57. Campos José L., Posada David, Morán Paloma, Genetic variation at MHC, mitochondrial and microsatellite loci in isolated populations of Brown trout (Salmo  trutta), 10.1007/s10592-005-9063-z
  58. CAMPOS JOSÉ L., POSADA DAVID, CABALLERO PABLO, MORÁN PALOMA, Spatio-temporal genetic variability in sea trout (Salmo trutta) populations from north-western Spain, 10.1111/j.1365-2427.2006.01721.x
  59. Capra H., Sabaton C., Gouraud V., Souchon Y., Lim P., A population dynamics model and habitat simulation as a tool to predict brown trout demography in natural and bypassed stream reaches, 10.1002/rra.729
  60. Carlsson J., The effect of family structure on the likelihood for kin-biased distribution: an empirical study of brown trout populations, 10.1111/j.1095-8649.2007.01546.x
  61. Carlsson Jens, Nilsson Jan, Population Genetic Structure of Brown Trout (Salmo Trutta L.) within a Northern Boreal Forest Stream, 10.1111/j.1601-5223.2000.00173.x
  62. Carlsson J., Olsen K. H., Nilsson J., Overli O., Stabell O. B., Microsatellites reveal fine-scale genetic structure in stream-living brown trout, 10.1111/j.1095-8649.1999.tb02076.x
  63. Carvalho Gary R., Hauser Lorenz, Advances in the molecular analysis of fish population structure, 10.1080/11250009809386791
  64. Castric, Heredity, 89, 27 (2002)
  65. Caswell, Matrix population models: construction, analysis and interpretation (2001)
  66. Cattanéo Franck, Lamouroux Nicolas, Breil Pascal, Capra Hervé, The influence of hydrological and biotic processes on brown trout (Salmo trutta) population dynamics, 10.1139/f01-186
  67. Cattaneo Franck, Hugueny Bernard, Lamouroux Nicolas, Synchrony in brown trout, Salmo trutta, population dynamics: a 'Moran effect' on early-life stages, 10.1034/j.1600-0706.2003.11912.x
  68. Caudron Arnaud, Champigneulle Alexis, Guyomard René, Largiadèr Carlo R., Assessment of three strategies practiced by fishery managers for restoring native brown trout (Salmo trutta) populations in Northern French Alpine Streams : Restoration strategies of native brown trout, 10.1111/j.1600-0633.2010.00458.x
  69. Cercueil A., PARENTE: Computer Program for Parentage Analysis, 10.1093/jhered/93.6.458
  70. CHAKRABORTY RANAJIT, HAAG MARIE, RYMAN NILS, STAHL GUNNAR, Hierarchical gene diversity analysis and its application to brown trout population data, 10.1111/j.1601-5223.1982.tb00705.x
  71. Charles S., de la Parra R. Bravo, Mallet J.P., Persat H., Auger P., 10.1023/a:1001785110237
  72. Charles S., Bravo De La Parra R., Mallet J.-P., Persat H., Auger P., Annual spawning migrations in modelling brown trout population dynamics inside an arborescent river network, 10.1016/s0304-3800(00)00277-5
  73. Charlesworth Brian, Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation, 10.1038/nrg2526
  74. CHEN CHIBIAO, DURAND ERIC, FORBES FLORENCE, FRANÇOIS OLIVIER, Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study, 10.1111/j.1471-8286.2007.01769.x
  75. Clark Jessica S., Rizzo Donna M., Watzin Mary C., Hession W. Cully, Spatial distribution and geomorphic condition of fish habitat in streams: an analysis using hydraulic modelling and geostatistics, 10.1002/rra.1085
  76. Clausen , B. Jowett , I. Biggs , B. Moeslund , B. 2004 Stream ecology and flow management Elsevier 411 453
  77. COOMBS JASON A., LETCHER B. H., NISLOW K. H., pedagog: software for simulating eco-evolutionary population dynamics, 10.1111/j.1755-0998.2009.02803.x
  78. CORANDER JUKKA, MARTTINEN PEKKA, Bayesian identification of admixture events using multilocus molecular markers : BAYESIAN IDENTIFICATION OF ADMIXTURE EVENTS, 10.1111/j.1365-294x.2006.02994.x
  79. Cornuet, Genetics, 153, 1989 (1999)
  80. Cornuet Jean-Marie, Santos Filipe, Beaumont Mark A., Robert Christian P., Marin Jean-Michel, Balding David J., Guillemaud Thomas, Estoup Arnaud, Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation, 10.1093/bioinformatics/btn514
  81. CORTEY MARTÍ, VERA MANUEL, PLA CARLES, GARCÍA-MARÍN JOSÉ-LOÍS, Northern and Southern expansions of Atlantic brown trout (Salmo trutta) populations during the Pleistocene : PHYLOGEOGRAPHY OF ATLANTIC BROWN TROUT, 10.1111/j.1095-8312.2009.01220.x
  82. CORUJO M., BLANCO G., VÁZQUEZ E., SÁNCHEZ J. A., Genetic structure of northwestern Spanish brown trout (Salmo trutta L.) populations, differences between microsatellite and allozyme loci : Genetic structure of Spanish brown trout, 10.1111/j.1601-5223.2004.01860.x
  83. Costello A. B., Down T. E., Pollard S. M., Pacas C. J., Taylor E. B., THE INFLUENCE OF HISTORY AND CONTEMPORARY STREAM HYDROLOGY ON THE EVOLUTION OF GENETIC DIVERSITY WITHIN SPECIES: AN EXAMINATION OF MICROSATELLITE DNA VARIATION IN BULL TROUT, SALVELINUS CONFLUENTUS (PISCES: SALMONIDAE), 10.1111/j.0014-3820.2003.tb00267.x
  84. Coulson Tim, Tuljapurkar Shripad, Childs Dylan Z., Using evolutionary demography to link life history theory, quantitative genetics and population ecology : Unification, 10.1111/j.1365-2656.2010.01734.x
  85. Cowx I. G., Gerdeaux D., The effects of fisheries management practises on freshwater ecosystems, 10.1111/j.1365-2400.2004.00411.x
  86. Creque Sara M., Rutherford Edward S., Zorn Troy G., Use of GIS-Derived Landscape-Scale Habitat Features to Explain Spatial Patterns of Fish Density in Michigan Rivers, 10.1577/m04-121.1
  87. Csilléry Katalin, Blum Michael G.B., Gaggiotti Oscar E., François Olivier, Approximate Bayesian Computation (ABC) in practice, 10.1016/j.tree.2010.04.001
  88. Cucherousset J., Aymes J. C., Santoul F., Céréghino R., Stable isotope evidence of trophic interactions between introduced brook trout Salvelinus fontinalis and native brown trout Salmo trutta in a mountain stream of south-west France, 10.1111/j.1095-8649.2007.01675.x
  89. Currat M., Ray N., Excoffier L., splatche: a program to simulate genetic diversity taking into account environmental heterogeneity : PROGRAM NOTE, 10.1046/j.1471-8286.2003.00582.x
  90. Daufresne Martin, Renault Olivier, Population fluctuations, regulation and limitation in stream-living brown trout, 10.1111/j.2006.0030-1299.14295.x
  91. Dauwalter Daniel C., Rahel Frank J., Distribution modelling to guide stream fish conservation: an example using the mountain sucker in the Black Hills National Forest, USA, 10.1002/aqc.940
  92. Dawson M. N, Louie K. D., Barlow M., Jacobs D. K., Swift C. C., Comparative phylogeography of sympatric sister species, Clevelandia ios and Eucyclogobius newberryi (Teleostei, Gobiidae), across the California Transition Zone, 10.1046/j.1365-294x.2002.01503.x
  93. DeAngelis Donald L., Mooij Wolf M., Individual-Based Modeling of Ecological and Evolutionary Processes, 10.1146/annurev.ecolsys.36.102003.152644
  94. DeSalle Rob, Amato George, The expansion of conservation genetics, 10.1038/nrg1425
  95. Dieterman, Application of a bioenergetics model for brown trout to evaluate growth in Southeast Minnesota streams (2004)
  96. DILLANE E., MCGINNITY P., COUGHLAN J. P., CROSS M. C., DE EYTO E., KENCHINGTON E., PRODÖHL P., CROSS T. F., Demographics and landscape features determine intrariver population structure in Atlantic salmon (Salmo salarL.): the case of the River Moy in Ireland, 10.1111/j.1365-294x.2008.03939.x
  97. DINEEN GERARD, HARRISON SIMON S. C., GILLER PAUL S., Growth, production and bioenergetics of brown trout in upland streams with contrasting riparian vegetation, 10.1111/j.1365-2427.2007.01698.x
  98. DIONNE MÉLANIE, CARON FRANÇOIS, DODSON JULIAN J., BERNATCHEZ LOUIS, Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation : LANDSCAPE GENETICS IN ATLANTIC SALMON, 10.1111/j.1365-294x.2008.03771.x
  99. Dolinsek Ivan J., Biron Pascale M., Grant James W. A., Assessing the effect of visual isolation on the population density of Atlantic salmon (Salmo salar) using GIS, 10.1002/rra.1024
  100. Duchesne Pierre, Godbout Marie-Helene, Bernatchez Louis, papa (package for the analysis of parental allocation): a computer program for simulated and real parental allocation, 10.1046/j.1471-8286.2002.00164.x
  101. Duchesne P., Meldgaard T., Berrebi P., Parentage Analysis with Few Contributing Breeders: Validation and Improvement, 10.1093/jhered/esm125
  102. Dudgeon David, Arthington Angela H., Gessner Mark O., Kawabata Zen-Ichiro, Knowler Duncan J., Lévêque Christian, Naiman Robert J., Prieur-Richard Anne-Hélène, Soto Doris, Stiassny Melanie L. J., Sullivan Caroline A., Freshwater biodiversity: importance, threats, status and conservation challenges, 10.1017/s1464793105006950
  103. Dunlop Erin S., Heino Mikko, Dieckmann Ulf, Eco-genetic modeling of contemporary life-history evolution, 10.1890/08-1404.1
  104. Easterling Michael R., Ellner Stephen P., Dixon Philip M., SIZE-SPECIFIC SENSITIVITY: APPLYING A NEW STRUCTURED POPULATION MODEL, 10.1890/0012-9658(2000)081[0694:sssaan]2.0.co;2
  105. Einum Sigurd, Nislow Keith H., Reynolds John D., Sutherland William J., Predicting population responses to restoration of breeding habitat in Atlantic salmon : Effects of breeding habitat restoration, 10.1111/j.1365-2664.2008.01464.x
  106. Eklov A. G., Greenberg L. A., Bronmark C., Larsson P., Berglund O., Influence of water quality, habitat and species richness on brown trout populations, 10.1111/j.1095-8649.1999.tb00610.x
  107. Elliott, Quantitative ecology and the brown trout (1994)
  108. Elliott J. M., Hurley M. A., A new energetics model for brown trout, Salmo trutta, 10.1046/j.1365-2427.1999.444483.x
  109. Elliott J. M., Hurley M. A., Daily energy intake and growth of piscivorous brown trout,Salmo trutta, 10.1046/j.1365-2427.2000.00560.x
  110. Ellner, Dynamic models in biology (2006)
  111. Ellner Stephen P., Rees Mark, Integral Projection Models for Species with Complex Demography, 10.1086/499438
  112. Enders Eva C., Clarke Keith D., Pennell Curtis J., Ollerhead L. M. Neil, Scruton David A., Comparison between PIT and radio telemetry to evaluate winter habitat use and activity patterns of juvenile Atlantic salmon and brown trout, 10.1007/s10750-006-0562-9
  113. EPPERSON BRYAN K., MCRAE BRAD H., SCRIBNER KIM, CUSHMAN SAMUEL A., ROSENBERG MICHAEL S., FORTIN MARIE-JOSÉE, JAMES PATRICK M. A., MURPHY MELANIE, MANEL STÉPHANIE, LEGENDRE PIERRE, DALE MARK R. T., Utility of computer simulations in landscape genetics : SIMULATIONS IN LANDSCAPE GENETICS, 10.1111/j.1365-294x.2010.04678.x
  114. ESTOUP A., ROUSSET F., MICHALAKIS Y., CORNUET J.-M., ADRIAMANGA M., GUYOMARD R., Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta), 10.1046/j.1365-294x.1998.00362.x
  115. Excoffier Laurent, Heckel Gerald, Computer programs for population genetics data analysis: a survival guide, 10.1038/nrg1904
  116. Excoffier L., Computer note. SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography, 10.1093/jhered/91.6.506
  117. Excoffier, Evolutionary Bioinformatics, 1, 47 (2005)
  118. Falconer, Introduction to quantitative genetics (1996)
  119. Fausch Kurt D., Profitable stream positions for salmonids: relating specific growth rate to net energy gain, 10.1139/z84-067
  120. Fausch Kurt D., White Ray J., Competition Between Brook Trout (Salvelinus fontinalis) and Brown Trout (Salmo trutta) for Positions in a Michigan Stream, 10.1139/f81-164
  121. FERGUSON A., Genetic differences among brown trout, Salmo trutta, stocks and their importance for the conservation and management of the species, 10.1111/j.1365-2427.1989.tb01346.x
  122. Ferguson A., The Importance of Identifying Conservation Units: Brown Trout and Pollan Biodiversity in Ireland, 10.3318/bioe.2004.104.3.33
  123. Ferguson, Genetic impacts of stocking on indigenous brown trout populations (2006)
  124. FILIPE A. F., MARQUES T. A., TIAGO P., RIBEIRO F., DA COSTA L. MOREIRA, COWX I. G., COLLARES-PEREIRA M. J., Selection of Priority Areas for Fish Conservation in Guadiana River Basin, Iberian Peninsula, 10.1111/j.1523-1739.2004.00620.x
  125. Fisher Ronald Aylmer, The genetical theory of natural selection., 10.5962/bhl.title.27468
  126. de la Hoz Franco Ernesto A., Budy Phaedra, Effects of biotic and abiotic factors on the distribution of trout and salmon along a longitudinal stream gradient, 10.1007/s10641-004-2591-4
  127. Francois O., Ancelet S., Guillot G., Bayesian Clustering Using Hidden Markov Random Fields in Spatial Population Genetics, 10.1534/genetics.106.059923
  128. FRASER DYLAN J., HANSEN MICHAEL M., ØSTERGAARD SIRI, TESSIER NATHALIE, LEGAULT MICHEL, BERNATCHEZ LOUIS, Comparative estimation of effective population sizes and temporal gene flow in two contrasting population systems, 10.1111/j.1365-294x.2007.03453.x
  129. Fukuwaka Masa-aki, Morita Kentaro, ORIGINAL ARTICLE: Increase in maturation size after the closure of a high seas gillnet fishery on hatchery-reared chum salmon Oncorhynchus keta : Maturation size increase after fishery closure, 10.1111/j.1752-4571.2008.00029.x
  130. GALINDO HEATHER M., PFEIFFER-HERBERT ANNA S., McMANUS MARGARET A., CHAO YI, CHAI FEI, PALUMBI STEPHEN R., Seascape genetics along a steep cline: using genetic patterns to test predictions of marine larval dispersal : SEASCAPE GENETICS AND CLINES, 10.1111/j.1365-294x.2010.04694.x
  131. Garant, Evolution, 57, 1133 (2003)
  132. Gevrey Muriel, Dimopoulos Ioannis, Lek Sovan, Review and comparison of methods to study the contribution of variables in artificial neural network models, 10.1016/s0304-3800(02)00257-0
  133. Gibbins C.N., Acornley R.M., Salmonid habitat modelling studies and their contribution to the development of an ecologically acceptable release policy for Kielder Reservoir, North-east England, 10.1002/(sici)1099-1646(200005/06)16:3<203::aid-rrr579>3.0.co;2-8
  134. GINOT V., EVHA, un logiciel d'évaluation de l'habitat du poisson sous Windows, 10.1051/kmae:1995034
  135. Gomez-Uchida D., Dunphy K. P., O’Connell M. F., Ruzzante D. E., Genetic divergence between sympatric Arctic charrSalvelinus alpinusmorphs in Gander Lake, Newfoundland: roles of migration, mutation and unequal effective population sizes, 10.1111/j.1095-8649.2008.02048.x
  136. Goslee Sarah C., Urban Dean L., TheecodistPackage for Dissimilarity-based Analysis of Ecological Data, 10.18637/jss.v022.i07
  137. Goudet, Journal of Heredity, 86, 485 (1995)
  138. Goudet, PCA-GEN (version 1.2.1): a computer program to perform principal component analysis on gene frequency data (1999)
  139. Gouraud V., Baglinière J.L., Baran P., Sabaton C., Lim P., Ombredane D., Factors regulating brown trout populations in two French rivers: application of a dynamic population model : APPLICATION OF A DYNAMIC POPULATION MODEL, 10.1002/rrr.655
  140. Gouraud V., Capra H., Sabaton C., Tissot L., Lim P., Vandewalle F., Fahrner G., Souchon Y., Long-term simulations of the dynamics of trout populations on river reaches bypassed by hydroelectric installations-analysis of the impact of different hydrological scenarios, 10.1002/rra.1129
  141. Gregersen F., Haugen T. O., Larsen O. N., Egg size differentiation among sympatric demes of brown trout: possible effects of density-dependent interactions among fry, 10.1111/j.1600-0633.2006.00129.x
  142. Grimm Volker, Ten years of individual-based modelling in ecology: what have we learned and what could we learn in the future?, 10.1016/s0304-3800(98)00188-4
  143. Grimm Volker, Railsback Steven F., Individual-based Modeling and Ecology : , ISBN:9781400850624, 10.1515/9781400850624
  144. Groeneveld E, A reparameterization to improve numerical optimization in multivariate REML (co)variance component estimation, 10.1186/1297-9686-26-6-537
  145. Guay J C, Boisclair D, Rioux D, Leclerc M, Lapointe M, Legendre P, Development and validation of numerical habitat models for juveniles of Atlantic salmon (Salmo salar), 10.1139/f00-162
  146. Guensch, Canadian Journal of Fisheries and Aquatic Sciences, 58, 446 (2001)
  147. Guillaume F., Rougemont J., Nemo: an evolutionary and population genetics programming framework, 10.1093/bioinformatics/btl415
  148. GUILLOT GILLES, MORTIER FRÉDÉRIC, ESTOUP ARNAUD, Geneland: a computer package for landscape genetics, 10.1111/j.1471-8286.2005.01031.x
  149. GUILLOT GILLES, LEBLOIS RAPHA��L, COULON AUR��LIE, FRANTZ ALAIN C., Statistical methods in spatial genetics, 10.1111/j.1365-294x.2009.04410.x
  150. Guisan Antoine, Zimmermann Niklaus E., Predictive habitat distribution models in ecology, 10.1016/s0304-3800(00)00354-9
  151. Hadfield Jarrod D., MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage, 10.18637/jss.v033.i02
  152. Halleraker J. H., Saltveit S. J., Harby A., Arnekleiv J. V., Fjeldstad H.-P., Kohler B., Factors influencing stranding of wild juvenile brown trout (Salmo trutta) during rapid and frequent flow decreases in an artificial stream, 10.1002/rra.752
  153. Hansen Michael M, Nielsen Einar E, Bekkevold Dorte, Mensberg Karen-Lise D, Admixture analysis and stocking impact assessment in brown trout (Salmo trutta), estimated with incomplete baseline data, 10.1139/f01-135
  154. Hansen Michael M., Ruzzante Daniel E., Nielsen Einar E., Bekkevold Dorte, Mensberg Karen-Lise D., Long-term effective population sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (Salmo trutta) populations : GENETIC VARIATION IN ANADROMOUS BROWN TROUT POPULATIONS, 10.1046/j.1365-294x.2002.01634.x
  155. HANSEN MICHAEL M., BEKKEVOLD DORTE, JENSEN LASSE F., MENSBERG KAREN-LISE D., NIELSEN EINAR E., Genetic restoration of a stocked brown trout Salmo trutta population using microsatellite DNA analysis of historical and contemporary samples : Genetic restoration of brown trout populations, 10.1111/j.1365-2664.2006.01185.x
  156. HANSEN MICHAEL M., SKAALA ØYSTEIN, JENSEN LASSE FAST, BEKKEVOLD DORTE, MENSBERG KAREN-LISE D., Gene flow, effective population size and selection at major histocompatibility complex genes: brown trout in the Hardanger Fjord, Norway : GENETIC STRUCTURE OF BROWN TROUT, 10.1111/j.1365-294x.2007.03255.x
  157. Hanson, Fish bioenergetics 3.0 (1997)
  158. Harby, State-of-the-art in data sampling, modelling analysis and applications of river habitat modelling (2004)
  159. Hard J. J., Phenotypic and genetic architecture of juvenile morphometry in chinook salmon, 10.1093/jhered/90.6.597
  160. Harris, Rivers, 3, 99 (1992)
  161. Hartl, Principles of population genetics (1989)
  162. Hauer Christoph, Unfer Günther, Schmutz Stefan, Habersack Helmut, The importance of morphodynamic processes at riffles used as spawning grounds during the incubation time of nase (Chondrostoma nasus), 10.1007/s10750-006-0406-7
  163. Haugen Thrond Oddvar, Aass Per, Stenseth Nils Christian, Vøllestad Leif Asbjørn, ORIGINAL ARTICLE: Changes in selection and evolutionary responses in migratory brown trout following the construction of a fish ladder : Human-induced evolution of brown trout vital rates, 10.1111/j.1752-4571.2008.00031.x
  164. HAUSER L., SEAMONS T. R., DAUER M., NAISH K. A., QUINN T. P., An empirical verification of population assignment methods by marking and parentage data: hatchery and wild steelhead (Oncorhynchus mykiss) in Forks Creek, Washington, USA : EMPIRICAL COMPARISON OF ASSIGNMENT METHODS, 10.1111/j.1365-294x.2006.03017.x
  165. Hayes John W., Stark John D., Shearer Karen A., Development and Test of a Whole-Lifetime Foraging and Bioenergetics Growth Model for Drift-Feeding Brown Trout, 10.1577/1548-8659(2000)129<0315:datoaw>2.0.co;2
  166. Hayes John W., Hughes Nicholas F., Kelly Lon H., Process-based modelling of invertebrate drift transport, net energy intake and reach carrying capacity for drift-feeding salmonids, 10.1016/j.ecolmodel.2007.04.032
  167. HEGGENES JAN, HABITAT SELECTION BY BROWN TROUT (SALMO TRUTTA) AND YOUNG ATLANTIC SALMON (S. SALAR) IN STREAMS: STATIC AND DYNAMIC HYDRAULIC MODELLING, 10.1002/(sici)1099-1646(199603)12:2/3<155::aid-rrr387>3.0.co;2-d
  168. Heggenes J., Røed K. H., Do dams increase genetic diversity in brown trout (Salmo trutta)? Microgeographic differentiation in a fragmented river, 10.1111/j.1600-0633.2006.00146.x
  169. Heggenes J., Roed K. H., Hoyheim B., Rosef L., Microsatellite diversity assessment of brown trout (Salmo trutta) population structure indicate limited genetic impact of stocking in a Norwegian alpine lake, 10.1034/j.1600-0633.2002.00009.x
  170. HEGGENES JAN, RØED KNUT H., JORDE PER ERIK, BRABRAND ÅGE, Dynamic micro-geographic and temporal genetic diversity in vertebrates: the case of lake-spawning populations of brown trout (Salmo trutta), 10.1111/j.1365-294x.2009.04101.x
  171. Hernandez R. D., A flexible forward simulator for populations subject to selection and demography, 10.1093/bioinformatics/btn522
  172. Hey, FPG: a computer program for forward population genetic simulation (2004)
  173. Hey J., Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis, 10.1534/genetics.103.024182
  174. Hey J., Nielsen R., Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics, 10.1073/pnas.0611164104
  175. Hickey John T, Diaz Gustavo E., FROM FLOW TO FISH TO DOLLARS: AN INTEGRATED APPROACH TO WATER ALLOCATION, 10.1111/j.1752-1688.1999.tb04193.x
  176. Hitt Nathaniel P., Angermeier Paul L., Evidence for fish dispersal from spatial analysis of stream network topology, 10.1899/07-096.1
  177. Holderegger Rolf, Kamm Urs, Gugerli Felix, Adaptive vs. neutral genetic diversity: implications for landscape genetics, 10.1007/s10980-005-5245-9
  178. Hudson, Oxford Surveys in Evolutionary Biology, 7, 1 (1990)
  179. Hudson R. R., Generating samples under a Wright-Fisher neutral model of genetic variation, 10.1093/bioinformatics/18.2.337
  180. Hudy Mark, Coombs Jason A., Nislow Keith H., Letcher Benjamin H., Dispersal and Within-Stream Spatial Population Structure of Brook Trout Revealed by Pedigree Reconstruction Analysis, 10.1577/t10-027.1
  181. Hughes Nicholas F., Selection of Positions by Drift-Feeding Salmonids in Dominance Hierarchies: Model and Test for Arctic Grayling (Thymallus arcticus) in Subarctic Mountain Streams, Interior Alaska, 10.1139/f92-223
  182. Hughes Nicholas F., A MODEL OF HABITAT SELECTION BY DRIFT-FEEDING STREAM SALMONIDS AT DIFFERENT SCALES, 10.1890/0012-9658(1998)079[0281:amohsb]2.0.co;2
  183. Hughes Nicholas F., Dill Lawrence M., Position Choice by Drift-Feeding Salmonids: Model and Test for Arctic Grayling (Thymallus arcticus) in Subarctic Mountain Streams, Interior Alaska, 10.1139/f90-228
  184. Hughes Nicholas F, Hayes John W, Shearer Karen A, Young Roger G, Testing a model of drift-feeding using three-dimensional videography of wild brown trout,Salmo trutta, in a New Zealand river, 10.1139/f03-126
  185. Imre I., Boisclair D., Moon phase and nocturnal density of Atlantic salmon parr in the Sainte-Marguerite River, Quebec, 10.1111/j.0022-1112.2005.00592.x
  186. Jager Henriette I., King Anthony W., Schumaker Nathan H., Ashwood Tom L., Jackson Barbara L., Spatial uncertainty analysis of population models, 10.1016/j.ecolmodel.2004.10.016
  187. Jenkins Thomas M., Diehl Sebastian, Kratz Kim W., Cooper Scott D., EFFECTS OF POPULATION DENSITY ON INDIVIDUAL GROWTH OF BROWN TROUT IN STREAMS, 10.1890/0012-9658(1999)080[0941:eopdoi]2.0.co;2
  188. Jensen A. J., Johnsen B. O., The functional relationship between peak spring floods and survival and growth of juvenile Atlantic Salmon (Salmo salar) and Brown Trout (Salmo trutta), 10.1046/j.1365-2435.1999.00358.x
  189. Jensen Lasse F., Hansen Michael M., Carlsson Jens, Loeschcke Volker, Mensberg Karen-Lise D., Spatial and temporal genetic differentiation and effective population size of brown trout (Salmo trutta, L.) in small Danish rivers, 10.1007/s10592-005-9014-8
  190. Jensen Jeffrey L, Bohonak Andrew J, Kelley Scott T, 10.1186/1471-2156-6-13
  191. Jensen H., Amundsen P.-A., Elliott J. M., Bohn T., Aspholm P. E., Prey consumption rates and growth of piscivorous brown trout in a subarctic watercourse, 10.1111/j.0022-1112.2006.00972.x
  192. Jessup Benjamin K., A strategy for simulating brown trout population dynamics and habitat quality in an urbanizing watershed, 10.1016/s0304-3800(98)00077-5
  193. Johansen M., Elliott J. M., Klemetsen A., Relationships between juvenile salmon,Salmo salarL., and invertebrate densities in the River Tana, Norway, 10.1111/j.1600-0633.2005.00107.x
  194. JOHNSON LUCINDA, GAGE STUART, Landscape approaches to the analysis of aquatic ecosystems, 10.1046/j.1365-2427.1997.00156.x
  195. Johnson Ronald L., Blumenshine Steven C., Coghlan Stephen M., A Bioenergetic Analysis of Factors Limiting Brown Trout Growth in an Ozark Tailwater River, 10.1007/s10641-006-9059-7
  196. Jones Nicholas E, Tonn William M, Resource selection functions for age-0 Arctic grayling (Thymallus arcticus) and their application to stream habitat compensation, 10.1139/f04-116
  197. Jones O. R., Wang J., Molecular marker-based pedigrees for animal conservation biologists, 10.1111/j.1469-1795.2009.00324.x
  198. JONES OWEN R., WANG JINLIANG, COLONY: a program for parentage and sibship inference from multilocus genotype data, 10.1111/j.1755-0998.2009.02787.x
  199. Jones Krista L., Poole Geoffrey C., Meyer Judy L., Bumback William, Kramer Elizabeth A., Quantifying Expected Ecological Response to Natural Resource Legislation: a Case Study of Riparian Buffers, Aquatic Habitat, and Trout Populations, 10.5751/es-01821-110215
  200. JONES ADAM G., SMALL CLAYTON M., PACZOLT KIMBERLY A., RATTERMAN NICHOLAS L., A practical guide to methods of parentage analysis : TECHNICAL REVIEW, 10.1111/j.1755-0998.2009.02778.x
  201. Jongejans Eelke, Skarpaas Olav, Shea Katriona, Dispersal, demography and spatial population models for conservation and control management, 10.1016/j.ppees.2007.09.005
  202. Jorde P. E., Ryman N., Unbiased Estimator for Genetic Drift and Effective Population Size, 10.1534/genetics.107.075481
  203. Jorde, Stochastic Hydraulics 2000, 671 (2000)
  204. Jorde, Proceedings of the 3rd International Symposium on Environmental Hydraulics (2001)
  205. Jørgensen Sven Erik, Overview of the model types available for development of ecological models, 10.1016/j.ecolmodel.2008.02.041
  206. Jowett, Rivers, 5, 1 (1995)
  207. Jowett, RHYHABSIM: river HYdraulic and HABitat SIMulation (2002)
  208. Jowett Ian G., Davey Andrew J. H., A Comparison of Composite Habitat Suitability Indices and Generalized Additive Models of Invertebrate Abundance and Fish Presence–Habitat Availability, 10.1577/t06-104.1
  209. Joy Michael K., Death Russell G., Predictive modelling and spatial mapping of freshwater fish and decapod assemblages using GIS and neural networks, 10.1111/j.1365-2427.2004.01248.x
  210. Kalinowski Steven T., Meeuwig Michael H., Narum Shawn R., Taper Mark L., Stream trees: a statistical method for mapping genetic differences between populations of freshwater organisms to the sections of streams that connect them, 10.1139/f08-171
  211. Kimmerer, Contributions to the biology of Central Valley salmonids, 305 (2001)
  212. Kimura, Genetics, 49, 725 (1964)
  213. Kimura, Genetics, 49, 561 (1964)
  214. Kingman J.F.C., The coalescent, 10.1016/0304-4149(82)90011-4
  215. Klemetsen A., Amundsen P.-A., Dempson J. B., Jonsson B., Jonsson N., O'Connell M. F., Mortensen E., Atlantic salmon Salmo salar L., brown trout Salmo trutta L. and Arctic charr Salvelinus alpinus (L.): a review of aspects of their life histories, 10.1034/j.1600-0633.2003.00010.x
  216. Koizumi I., Maekawa K., Metapopulation structure of stream-dwelling Dolly Varden charr inferred from patterns of occurrence in the Sorachi River basin, Hokkaido, Japan, 10.1111/j.1365-2427.2004.01240.x
  217. Kool Johnathan T., An object-oriented, individual-based approach for simulating the dynamics of genes in subdivided populations, 10.1016/j.ecoinf.2009.06.002
  218. Krieg, Comptes Rendus de l’Académie des Sciences, 296, 1089 (1983)
  219. Kristensen E. A., Closs G. P., Variation in growth and aggression of juvenile brown trout (Salmo trutta) from upstream and downstream reaches of the same river, 10.1111/j.1600-0633.2007.00266.x
  220. Kruuk L. E. B., Estimating genetic parameters in natural populations using the 'animal model', 10.1098/rstb.2003.1437
  221. Kuhner M. K., LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters, 10.1093/bioinformatics/btk051
  222. Kuhner Mary K., Coalescent genealogy samplers: windows into population history, 10.1016/j.tree.2008.09.007
  223. Labonne Jacques, Ravigné Virginie, Parisi Bruno, Gaucherel Cédric, Linking dendritic network structures to population demogenetics: The downside of connectivity, 10.1111/j.0030-1299.2008.16976.x
  224. Lacy, Ecological Bulletin, 48, 191 (2000)
  225. Lacy, VORTEX: a stochastic simulation of the extinction process (2005)
  226. Laikre , L. 1999 Conservation genetic management of brown trout ( Salmo trutta ) in Europe
  227. LAMOUROUX NICOLAS, CAPRA HERVE, Simple predictions of instream habitat model outputs for target fish populations, 10.1046/j.1365-2427.2002.00879.x
  228. Lamouroux Nicolas, Jowett Ian G, Generalized instream habitat models, 10.1139/f04-163
  229. Lamouroux Nicolas, Capra Herve, Pouilly Marc, Souchon Yves, Fish habitat preferences in large streams of southern France, 10.1046/j.1365-2427.1999.00521.x
  230. Lancaster Jill, Downes Barbara J., Linking the hydraulic world of individual organisms to ecological processes: Putting ecology into ecohydraulics, 10.1002/rra.1274
  231. LANDGUTH ERIN L., CUSHMAN S. A., cdpop: A spatially explicit cost distance population genetics program : COMPUTER PROGRAM NOTE, 10.1111/j.1755-0998.2009.02719.x
  232. Larkin P A, Fisheries Management--an Essay for Ecologists, 10.1146/annurev.es.09.110178.000421
  233. Latch Emily K., Dharmarajan Guha, Glaubitz Jeffrey C., Rhodes Olin E., Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation, 10.1007/s10592-005-9098-1
  234. Laval G., Excoffier L., SIMCOAL 2.0: a program to simulate genomic diversity over large recombining regions in a subdivided population with a complex history, 10.1093/bioinformatics/bth264
  235. Pichon Céline Le, Gorges Guillaume, Boët Philippe, Baudry Jacques, Goreaud François, Faure Thierry, A Spatially Explicit Resource-Based Approach for Managing Stream Fishes in Riverscapes, 10.1007/s00267-005-0027-3
  236. LEBERG PAUL, GENETIC APPROACHES FOR ESTIMATING THE EFFECTIVE SIZE OF POPULATIONS, 10.2193/0022-541x(2005)69[1385:gafete]2.0.co;2
  237. Lebreton Jean-Dominique, Dynamical and statistical models of vertebrate population dynamics, 10.1016/j.crvi.2006.06.007
  238. Lee Danny C., Rieman Bruce E., Population Viability Assessment of Salmonids by Using Probabilistic Networks, 10.1577/1548-8675(1997)017<1144:pvaosb>2.3.co;2
  239. Lefkovitch L. P., The Study of Population Growth in Organisms Grouped by Stages, 10.2307/2528348
  240. Lehane B. M., Giller P. S., O'Halloran J., Walsh P. M., Relative Influences of Catchment Geology, Land Use and in-Stream Habitat on Brown Trout Populations in South-Western Ireland, 10.3318/bioe.2004.104.1.43
  241. Lehtonen Paula K., Tonteri Anni, Sendek Dmitri, Titov Sergey, Primmer Craig R., Spatio-temporal genetic structuring of brown trout (Salmo trutta L.) populations within the River Luga, northwest Russia, 10.1007/s10592-008-9577-2
  242. Lek Sovan, Baran Philippe, Estimations of trout density and biomass: a neural networks approach, 10.1016/s0362-546x(96)00291-x
  243. Lek Sovan, Belaud Alain, Baran Philippe, Dimopoulos Ioannis, Delacoste Marc, Role of some environmental variables in trout abundance models using neural networks, 10.1051/alr:1996004
  244. LEPRIEUR F., HICKEY M. A., ARBUCKLE C. J., CLOSS G. P., BROSSE S., TOWNSEND C. R., Hydrological disturbance benefits a native fish at the expense of an exotic fish : Hydrological disturbance favours a native fish, 10.1111/j.1365-2664.2006.01201.x
  245. LESLIE P. H., ON THE USE OF MATRICES IN CERTAIN POPULATION MATHEMATICS, 10.1093/biomet/33.3.183
  246. Letcher Benjamin H., Nislow Keith H., Coombs Jason A., O'Donnell Matthew J., Dubreuil Todd L., Population Response to Habitat Fragmentation in a Stream-Dwelling Brook Trout Population, 10.1371/journal.pone.0001139
  247. Lischke , H. Loffler , T. Thornton , P. Zimmermann , N. 2007 A changing world. Challenges for landscape research Springer 249 272
  248. Lobón-Cerviá Javier, The importance of recruitment for the production dynamics of stream-dwelling brown trout (Salmo trutta), 10.1139/f05-166
  249. LOBON-CERVIA J., Density-dependent growth in stream-living Brown Trout Salmo trutta L., 10.1111/j.1365-2435.2006.01204.x
  250. Lobón-Cerviá Javier, Instability of stream salmonid population dynamics under strong environmental limitations-a reply, 10.1111/j.2006.0030-1299.14996.x
  251. Lobón-Cerviá Javier, Rincón Pedro A., Environmental determinants of recruitment and their influence on the population dynamics of stream-living brown troutSalmo trutta, 10.1111/j.0030-1299.2004.12989.x
  252. Lopes Luis Filipe Gomes, Do Carmo José S.Antunes, Vitor Cortes Rui Manuel, Oliveira Daniel, Hydrodynamics and water quality modelling in a regulated river segment: application on the instream flow definition, 10.1016/j.ecolmodel.2003.07.009
  253. Louhi P., Mäki-Petäys A., Erkinaro J., Spawning habitat of Atlantic salmon and brown trout: general criteria and intragravel factors, 10.1002/rra.1072
  254. Luikart Gordon, England Phillip R., Statistical analysis of microsatellite DNA data, 10.1016/s0169-5347(99)01632-8
  255. Luikart Gordon, Ryman Nils, Tallmon David A., Schwartz Michael K., Allendorf Fred W., Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches, 10.1007/s10592-010-0050-7
  256. Lunn David J., Thomas Andrew, Best Nicky, Spiegelhalter David, 10.1023/a:1008929526011
  257. Lynch, Genetics and analysis of quantitative traits (1998)
  258. Malthus, An essay on the principle of population (1798)
  259. Manel Stéphanie, Dias Jean-Marie, Ormerod Steve J., Comparing discriminant analysis, neural networks and logistic regression for predicting species distributions: a case study with a Himalayan river bird, 10.1016/s0304-3800(99)00113-1
  260. Manel Stéphanie, Schwartz Michael K., Luikart Gordon, Taberlet Pierre, Landscape genetics: combining landscape ecology and population genetics, 10.1016/s0169-5347(03)00008-9
  261. MANEL S, GAGGIOTTI O, WAPLES R, Assignment methods: matching biological questions with appropriate techniques, 10.1016/j.tree.2004.12.004
  262. Manni Franz, Guerard Etienne, Heyer Evelyne, Geographic Patterns of (Genetic, Morphologic, Linguistic) Variation: How Barriers Can Be Detected by Using Monmonier's Algorithm, 10.1353/hub.2004.0034
  263. MARIDET L., SOUCHON Y., Habitat potentiel de la truite fario (Salmo trutta fario, L. 1758) dans trois cours d'eau du Massif Central. Approche méthodologique et premiers résultats sur le rôle de la végétation rivulaire arborée, 10.1051/kmae:1995001
  264. Marjoram Paul, Tavaré Simon, Modern computational approaches for analysing molecular genetic variation data, 10.1038/nrg1961
  265. Martyniuk C. J., Perry G. M. L., Mogahadam H. K., Ferguson M. M., Danzmann R. G., The genetic architecture of correlations among growth-related traits and male age at maturation in rainbow trout, 10.1046/j.1095-8649.2003.00188.x
  266. Massa-Gallucci Alexia, Coscia Ilaria, O’Grady Martin, Kelly-Quinn Mary, Mariani Stefano, Patterns of genetic structuring in a brown trout (Salmo trutta L.) metapopulation, 10.1007/s10592-010-0061-4
  267. Matulla C., Schmutz S., Melcher A., Gerersdorfer T., Haas P., Assessing the impact of a downscaled climate change simulation on the fish fauna in an Inner-Alpine River, 10.1007/s00484-007-0107-6
  268. McGarigal, FRAGSTATS: spatial pattern analysis program for categorical maps (2002)
  269. McKeown N. J., Hynes R. A., Duguid R. A., Ferguson A., Prodöhl P. A., Phylogeographic structure of brown troutSalmo truttain Britain and Ireland: glacial refugia, postglacial colonization and origins of sympatric populations, 10.1111/j.1095-8649.2009.02490.x
  270. McRae Brian J., Diana James S., Factors Influencing Density of Age-0 Brown Trout and Brook Trout in the Au Sable River, Michigan, 10.1577/ft-03-160.1
  271. MEEUWIG MICHAEL H., GUY CHRISTOPHER S., KALINOWSKI STEVEN T., FREDENBERG WADE A., Landscape influences on genetic differentiation among bull trout populations in a stream-lake network : DIFFERENTIATION AMONG BULL TROUT POPULATIONS, 10.1111/j.1365-294x.2010.04655.x
  272. Mengin N., Thorel A., Liebig H., Segura G., Note technique ProCURVE : logiciel de calcul des préférences d'habitat pour les organismes aquatiques, 10.1051/limn/2002027
  273. Meyer K., DFREML—A Set of Programs to Estimate Variance Components Under an Individual Animal Model, 10.1016/s0022-0302(88)79977-4
  274. Meyer Karin, WOMBAT—A tool for mixed model analyses in quantitative genetics by restricted maximum likelihood (REML), 10.1631/jzus.2007.b0815
  275. Milner N. J., Wyatt R. J., Scott M. D., Variability in the distribution and abundance of stream salmonids, and the associated use of habitat models, 10.1111/j.1095-8649.1993.tb01182.x
  276. Milner N.J., Elliott J.M., Armstrong J.D., Gardiner R., Welton J.S., Ladle M., The natural control of salmon and trout populations in streams, 10.1016/s0165-7836(02)00157-1
  277. Morrissey Michael B., de Kerckhove Derrick T., The Maintenance of Genetic Variation Due to Asymmetric Gene Flow in Dendritic Metapopulations, 10.1086/648311
  278. Mouton Ans, Meixner Harald, Goethals Peter L. M., De Pauw Niels, Mader Helmut, Concept and application of the usable volume for modelling the physical habitat of riverine organisms, 10.1002/rra.998
  279. Mouton Ans M., Schneider Matthias, Depestele Jochen, Goethals Peter L.M., De Pauw Niels, Fish habitat modelling as a tool for river management, 10.1016/j.ecoleng.2006.11.002
  280. Mouton Ans M., Schneider Matthias, Peter Armin, Holzer Georg, Müller Rudolf, Goethals Peter L.M., De Pauw Niels, Optimisation of a fuzzy physical habitat model for spawning European grayling (Thymallus thymallus L.) in the Aare river (Thun, Switzerland), 10.1016/j.ecolmodel.2008.02.028
  281. Naish Kerry A, Hard Jeffrey J, Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes, 10.1111/j.1467-2979.2008.00302.x
  282. Narum Shawn R., Zendt Joseph S., Graves David, Sharp William R., Influence of landscape on resident and anadromous life history types ofOncorhynchus mykiss, 10.1139/f08-025
  283. Nehring, Rivers, 4, 1 (1993)
  284. NEUENSCHWANDER SAMUEL, AQUASPLATCHE: a program to simulate genetic diversity in populations living in linear habitats, 10.1111/j.1471-8286.2006.01300.x
  285. Neuenschwander S., Hospital F., Guillaume F., Goudet J., quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation, 10.1093/bioinformatics/btn219
  286. NEUENSCHWANDER SAMUEL, LARGIADÈR CARLO R., RAY NICOLAS, CURRAT MATHIAS, VONLANTHEN PASCAL, EXCOFFIER LAURENT, Colonization history of the Swiss Rhine basin by the bullhead (Cottus gobio): inference under a Bayesian spatially explicit framework : ABC ESTIMATION OF COLONIZATION HISTORY, 10.1111/j.1365-294x.2007.03621.x
  287. NIKOLIC NATACHA, BUTLER JAMES R. A., BAGLINIÈRE JEAN-LUC, LAUGHTON ROBERT, McMYN IAIN A. G., CHEVALET CLAUDE, An examination of genetic diversity and effective population size in Atlantic salmon populations, 10.1017/s0016672309990346
  288. Nislow K. H., Einum S., Folt C. L., Testing predictions of the critical period for survival concept using experiments with stocked Atlantic salmon, 10.1111/j.0022-1112.2004.00561.x
  289. Nordborg, Handbook of statistical genetics. Chichester, 179 (2001)
  290. NORRIS KEN, Managing threatened species: the ecological toolbox, evolutionary theory and declining-population paradigm, 10.1111/j.0021-8901.2004.00910.x
  291. Northcote T. G., Lobón-Cerviá J., Increasing experimental approaches in stream trout research – 1987–2006, 10.1111/j.1600-0633.2007.00281.x
  292. Nykänen M, Huusko A, Transferability of habitat preference criteria for larval European grayling (Thymallus thymallus), 10.1139/f03-156
  293. Öhlund Gunnar, Nordwall Fredrik, Degerman Erik, Eriksson Torleif, Life history and large-scale habitat use of brown trout (Salmotrutta) and brook trout (Salvelinus fontinalis) — implications for species replacement patterns, 10.1139/f08-003
  294. Ohta Tomoko, Kimura Motoo, A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population, 10.1017/s0016672300012994
  295. Olden Julian D, Jackson Donald A, Illuminating the “black box”: a randomization approach for understanding variable contributions in artificial neural networks, 10.1016/s0304-3800(02)00064-9
  296. Olsen, SSIIM: a three-dimensional numerical model for Simulation of Sediment movements In water Intakes with Multiblock option (2010)
  297. Ortigosa G.Ranci, De Leo G.A, Gatto M, VVF: integrating modelling and GIS in a software tool for habitat suitability assessment, 10.1016/s1364-8152(99)00029-8
  298. Østergaard Siri, Hansen Michael M., Loeschcke Volker, Nielsen Einar E., Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment : GENETIC STRUCTURE IN BROWN TROUT, 10.1046/j.1365-294x.2003.01976.x
  299. Otto, A biologist’s guide to mathematical modeling in ecology and evolution (2007)
  300. Ovidio Michaël, Capra Hervé, Philippart Jean-Claude, Regulated discharge produces substantial demographic changes on four typical fish species of a small salmonid stream, 10.1007/s10750-008-9399-8
  301. Ozgul Arpat, Childs Dylan Z., Oli Madan K., Armitage Kenneth B., Blumstein Daniel T., Olson Lucretia E., Tuljapurkar Shripad, Coulson Tim, Coupled dynamics of body mass and population growth in response to environmental change, 10.1038/nature09210
  302. PáEZ D. J., MORRISSEY M., BERNATCHEZ L., DODSON J. J., The genetic basis of early-life morphological traits and their relation to alternative male reproductive tactics in Atlantic salmon, 10.1111/j.1420-9101.2010.01941.x
  303. PALSBOLL P, BERUBE M, ALLENDORF F, Identification of management units using population genetic data, 10.1016/j.tree.2006.09.003
  304. Parasiewicz Piotr, MesoHABSIM: A concept for application of instream flow models in river restoration planning, 10.1577/1548-8446(2001)026<0006:m>2.0.co;2
  305. Parasiewicz Piotr, The MesoHABSIM model revisited, 10.1002/rra.1045
  306. PATTERSON T, THOMAS L, WILCOX C, OVASKAINEN O, MATTHIOPOULOS J, State–space models of individual animal movement, 10.1016/j.tree.2007.10.009
  307. Pavey Scott A., Nielsen Jennifer L., Hamon Troy R., RECENT ECOLOGICAL DIVERGENCE DESPITE MIGRATION IN SOCKEYE SALMON (ONCORHYNCHUS NERKA) : RECENT DIVERGENCE DESPITE MIGRATION, 10.1111/j.1558-5646.2009.00927.x
  308. Payne, RHABSIM: Riverine HABitat SIMuation (2005)
  309. PEAKALL ROD, SMOUSE PETER E., genalex 6: genetic analysis in Excel. Population genetic software for teaching and research, 10.1111/j.1471-8286.2005.01155.x
  310. Pearse Devon E., Crandall Keith A., Beyond FST: Analysis of population genetic data for conservation, 10.1007/s10592-003-1863-4
  311. Peck Steven L., Simulation as experiment: a philosophical reassessment for biological modeling, 10.1016/j.tree.2004.07.019
  312. Peng B., Amos C. I., Forward-time simulations of non-random mating populations using simuPOP, 10.1093/bioinformatics/btn179
  313. Peng B., Kimmel M., simuPOP: a forward-time population genetics simulation environment, 10.1093/bioinformatics/bti584
  314. Perry Guy M. L., Audet Céline, Laplatte Benjamin, Bernatchez Louis, SHIFTING PATTERNS IN GENETIC CONTROL AT THE EMBRYO-ALEVIN BOUNDARY IN BROOK CHARR, 10.1111/j.0014-3820.2004.tb00485.x
  315. Perry Guy M.L., Martyniuk Chris M., Ferguson Moira M., Danzmann Roy G., Genetic parameters for upper thermal tolerance and growth-related traits in rainbow trout (Oncorhynchus mykiss), 10.1016/j.aquaculture.2005.04.042
  316. Pertoldi Cino, Topping Chris, The use of agent-based modelling of genetics in conservation genetics studies, 10.1016/j.jnc.2003.12.001
  317. Peterson, Ecological scale: theory and applications (1998)
  318. Petts, Water quality technical support program: emerging concepts for integrating human and environmental water needs in river basin management (2005)
  319. Piry S., GENECLASS2: A Software for Genetic Assignment and First-Generation Migrant Detection, 10.1093/jhered/esh074
  320. Poff N. LeRoy, Allan J. David, Bain Mark B., Karr James R., Prestegaard Karen L., Richter Brian D., Sparks Richard E., Stromberg Julie C., The Natural Flow Regime, 10.2307/1313099
  321. POISSANT JOCELYN, KNIGHT THOMAS W., FERGUSON MOIRA M., Nonequilibrium conditions following landscape rearrangement: the relative contribution of past and current hydrological landscapes on the genetic structure of a stream-dwelling fish, 10.1111/j.1365-294x.2005.02500.x
  322. Pont D, Hugueny B, Oberdorff T, Modelling habitat requirement of European fishes: do species have similar responses to local and regional environmental constraints?, 10.1139/f04-183
  323. POUILLY M., VALENTIN S., CAPRA H., GINOT V., SOUCHON Y., Méthode des microhabitats : principes et protocoles d'application, 10.1051/kmae:1995004
  324. Pritchard, Genetics, 155, 945 (2000)
  325. Pudovkin, Genetics, 144, 383 (1996)
  326. R Development Core Team, R: a language and environment for statistical computing (2010)
  327. Railsback Steven F., Rose Kenneth A., Bioenergetics Modeling of Stream Trout Growth: Temperature and Food Consumption Effects, 10.1577/1548-8659(1999)128<0241:bmostg>2.0.co;2
  328. Railsback Steven F., Stauffer Howard B., Harvey Bret C., WHAT CAN HABITAT PREFERENCE MODELS TELL US? TESTS USING A VIRTUAL TROUT POPULATION, 10.1890/02-5051
  329. Railsback Steven F., Harvey Bret C., Jackson Stephen K., Lamberson Roland H., InSTREAM: the individual-based stream trout research and environmental assessment model, 10.2737/psw-gtr-218
  330. Raleigh, Habitat suitability index models and instream flow suitability curves: brown trout (1986)
  331. Rambaut, Computer Applications in the Biosciences, 13, 235 (1997)
  332. Ramula Satu, Rees Mark, Buckley Yvonne M., Integral projection models perform better for small demographic data sets than matrix population models: a case study of two perennial herbs, 10.1111/j.1365-2664.2009.01706.x
  333. Ray Nicolas, Currat Mathias, Foll Matthieu, Excoffier Laurent, SPLATCHE2: a spatially explicit simulation framework for complex demography, genetic admixture and recombination, 10.1093/bioinformatics/btq579
  334. Raymond, Journal of Heredity, 86, 248 (1995)
  335. Rees Mark, Ellner Stephen P., Integral projection models for populations in temporally varying environments, 10.1890/08-1474.1
  336. Reyjol Yorick, Lim Puy, Belaud Alain, Lek Sovan, Modelling of microhabitat used by fish in natural and regulated flows in the river Garonne (France), 10.1016/s0304-3800(01)00301-5
  337. Ricker W. E., Stock and Recruitment, 10.1139/f54-039
  338. Ricker, The stock concept in Pacific salmon, 19 (1972)
  339. Rieman Bruce, Peterson James T, Clayton James, Howell Philip, Thurow Russell, Thompson William, Lee Danny, Evaluation of potential effects of federal land management alternatives on trends of salmonids and their habitats in the interior Columbia River basin, 10.1016/s0378-1127(01)00453-4
  340. Rivot E., Prévost E., Parent E., Baglinière J.L., A Bayesian state-space modelling framework for fitting a salmon stage-structured population dynamic model to multiple time series of field data, 10.1016/j.ecolmodel.2004.05.011
  341. Rogers Sean M., Gagnon V., Bernatchez Louis, GENETICALLY BASED PHENOTYPE-ENVIRONMENT ASSOCIATION FOR SWIMMING BEHAVIOR IN LAKE WHITEFISH ECOTYPES (COREGONUS CLUPEAFORMIS MITCHILL), 10.1111/j.0014-3820.2002.tb00155.x
  342. Rosenberg Noah A., Nordborg Magnus, GENEALOGICAL TREES, COALESCENT THEORY AND THE ANALYSIS OF GENETIC POLYMORPHISMS, 10.1038/nrg795
  343. Rosenfeld Jordan, Assessing the Habitat Requirements of Stream Fishes: An Overview and Evaluation of Different Approaches, 10.1577/t01-126
  344. ROUSSEL J. M., BARDONNET A., HABITAT DE LA TRUITE COMMUNE (SALMO TRUTTA L.) PENDANT LA PÉRIODE JUVÉNILE EN RUISSEAU : PRÉFÉRENCES, MOUVEMENTS, VARIATIONS JOURNALIÈRES ET SAISONNIÈRES., 10.1051/kmae:2002044
  345. ROUSSET FRANÇOIS, genepop’007: a complete re-implementation of the genepop software for Windows and Linux, 10.1111/j.1471-8286.2007.01931.x
  346. SABATON C., SIEGLER L., GOURAUD V., BAGLINIERE J.L., MANNE S., Presentation and first applications of a dynamic population model for brown trout, Salmo trutta L.: aid to river management, 10.1046/j.1365-2400.1997.00084.x
  347. Sanz Luis, Bravo de la Parra Rafael, Approximate reduction of multiregional models with environmental stochasticity, 10.1016/j.mbs.2005.03.015
  348. Sanz Ball-llosera N., Garcìa-Marìn J.L., Pla C., 10.1023/a:1020527420654
  349. SANZ LUIS, BLASCO ÁNGEL, BRAVO DE LA PARRA RAFAEL, APPROXIMATE REDUCTION OF MULTI-TYPE GALTON–WATSON PROCESSES WITH TWO TIME SCALES, 10.1142/s0218202503002659
  350. Sato T., Harada Y., Loss of genetic variation and effective population size of Kirikuchi charr: implications for the management of small, isolated salmonid populations, 10.1111/j.1469-1795.2008.00165.x
  351. Schager Eva, Peter Armin, Burkhardt-Holm Patricia, Status of young-of-the-year brown trout (Salmo trutta fario) in Swiss streams: factors influencing YOY trout recruitment, 10.1007/s00027-007-0845-x
  352. Schindler Daniel E., Hilborn Ray, Chasco Brandon, Boatright Christopher P., Quinn Thomas P., Rogers Lauren A., Webster Michael S., Population diversity and the portfolio effect in an exploited species, 10.1038/nature09060
  353. SCHNEIDER DAVID C., The Rise of the Concept of Scale in Ecology, 10.1641/0006-3568(2001)051[0545:trotco]2.0.co;2
  354. Schneider , M. Jorde , K. 2003 Fuzzy-rule based models for the evaluation of fish habitat quality and instream flow assessment Fort Collins, Colorado
  355. Schneider , M. Jorde , K. Zollner , F. Kerle , F. Eisner , A. 2002 Use of habitat models for decision support in water resources management Schmitz , G.H.
  356. Schumaker, HexSim (version 2.1) (2011)
  357. SCHWARTZ M, LUIKART G, WAPLES R, Genetic monitoring as a promising tool for conservation and management, 10.1016/j.tree.2006.08.009
  358. Segelbacher Gernot, Cushman Samuel A., Epperson Bryan K., Fortin Marie-Josée, Francois Olivier, Hardy Olivier J., Holderegger Rolf, Taberlet Pierre, Waits Lisette P., Manel Stéphanie, Applications of landscape genetics in conservation biology: concepts and challenges, 10.1007/s10592-009-0044-5
  359. SERBEZOV DIMITAR, BERNATCHEZ LOUIS, OLSEN ESBEN M., VØLLESTAD LEIF A., Mating patterns and determinants of individual reproductive success in brown trout (Salmo trutta) revealed by parentage analysis of an entire stream living population : MATING PATTERNS AND REPRODUCTIVE SUCCESS IN TROUT, 10.1111/j.1365-294x.2010.04744.x
  360. SERBEZOV D., BERNATCHEZ L., OLSEN E. M., VØLLESTAD L. A., Quantitative genetic parameters for wild stream-living brown trout: heritability and parental effects : Quantitative genetic parameters for wild stream-living brown trout, 10.1111/j.1420-9101.2010.02028.x
  361. Shannon P., Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks, 10.1101/gr.1239303
  362. Shieh Chjeng-Lun, Guh Yuh-Rong, Wang Shi-Qin, The application of range of variability approach to the assessment of a check dam on riverine habitat alteration, 10.1007/s00254-006-0470-3
  363. Skalski G. T., Joint Estimation of Migration Rate and Effective Population Size Using the Island Model, 10.1534/genetics.107.078998
  364. SØNSTEBØ J. H., BORGSTRØM R., HEUN M., A comparison of AFLPs and microsatellites to identify the population structure of brown trout (Salmo trutta L.) populations from Hardangervidda, Norway : AFLPs VS. MICROSATELLITES IN HARDANGERVIDDA BROWN TROUT, 10.1111/j.1365-294x.2007.03256.x
  365. Sønstebø Jørn Henrik, Borgstrøm Reidar, Heun Manfred, Genetic structure of brown trout (Salmo trutta L.) from the Hardangervidda mountain plateau (Norway) analyzed by microsatellite DNA: a basis for conservation guidelines, 10.1007/s10592-006-9145-6
  366. SORK VICTORIA L., WAITS LISETTE, INTRODUCTION: Contributions of landscape genetics - approaches, insights, and future potential : INTRODUCTION, 10.1111/j.1365-294x.2010.04786.x
  367. Souchon Y., Trocherie F., Fragnoud E., Lacombe C., Les modèles numériques des microhabitats des passons : application et nouveaux développements, 10.7202/705056ar
  368. Spangler G. R., Berst A. H., Koonce J. F., Perspectives and Policy Recommendations on the Relevance of the Stock Concept to Fishery Management, 10.1139/f81-237
  369. Spence Rachel, Hickley Phil, The use of PHABSIM in the management of water resources and fisheries in England and Wales, 10.1016/s0925-8574(00)00099-9
  370. Stanfield, American Fisheries Society Symposium, 48, 601 (2006)
  371. Statzner Bernhard, Sagnes Pierre, Champagne Jean-Yves, Viboud Sylvie, Contribution of benthic fish to the patch dynamics of gravel and sand transport in streams : BENTHIC STREAM FISH AND EROSION, 10.1029/2003wr002270
  372. Steen , P. 2008 Michigan stream fish: distribution models, future predictions, and urban impacts. Ph.D. thesis University of Michigan
  373. Steffler, River2D computer program (2006)
  374. Stoneman C. L., Jones M. L., The Influence of Habitat Features on the Biomass and Distribution of Three Species of Southern Ontario Stream Salmonines, 10.1577/1548-8659(2000)129<0639:tiohfo>2.3.co;2
  375. Storfer A, Murphy M A, Evans J S, Goldberg C S, Robinson S, Spear S F, Dezzani R, Delmelle E, Vierling L, Waits L P, Putting the ‘landscape’ in landscape genetics, 10.1038/sj.hdy.6800917
  376. STORFER ANDREW, MURPHY MELANIE A., SPEAR STEPHEN F., HOLDEREGGER ROLF, WAITS LISETTE P., Landscape genetics: where are we now? : TRENDS IN LANDSCAPE GENETICS, 10.1111/j.1365-294x.2010.04691.x
  377. Strand Allan E., metasim 1.0: an individual-based environment for simulating population genetics of complex population dynamics, 10.1046/j.1471-8286.2002.00208.x
  378. STRAND ALLAN E., NIEHAUS JAMES M., kernelpop, a spatially explicit population genetic simulation engine, 10.1111/j.1471-8286.2007.01832.x
  379. Sušnik Simona, Snoj Aleš, Wilson Iain F., Mrdak Danilo, Weiss Steven, Historical demography of brown trout (Salmo trutta) in the Adriatic drainage including the putative S. letnica endemic to Lake Ohrid, 10.1016/j.ympev.2006.08.021
  380. TALLMON DAVID A., KOYUK ALLY, LUIKART GORDON, BEAUMONT MARK A., COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation : COMPUTER PROGRAMS, 10.1111/j.1471-8286.2007.01997.x
  381. Taylor Eric B, A review of local adaptation in Salmonidac, with particular reference to Pacific and Atlantic salmon, 10.1016/0044-8486(91)90383-i
  382. Teixeira Amílcar, Cortes Rui M. V., PIT telemetry as a method to study the habitat requirements of fish populations: application to native and stocked trout movements, 10.1007/s10750-006-0551-z
  383. TEIXEIRA A., CORTES R. M.V., OLIVEIRA D., HABITAT USE BY NATIVE AND STOCKED TROUT (SALMO TRUTTA L.) IN TWO NORTHEAST STREAMS, PORTUGAL , 10.1051/kmae:2006004
  384. ter Braak, CANOCO: software for canonical community ordination (version 4.5) (2002)
  385. Tharme R. E., A global perspective on environmental flow assessment: emerging trends in the development and application of environmental flow methodologies for rivers, 10.1002/rra.736
  386. Thériault Véronique, Dunlop Erin S., Dieckmann Ulf, Bernatchez Louis, Dodson Julian J., ORIGINAL ARTICLE: The impact of fishing-induced mortality on the evolution of alternative life-history tactics in brook charr : Fishing-induced migration evolution, 10.1111/j.1752-4571.2008.00022.x
  387. Thiele Jan C., Grimm Volker, NetLogo meets R: Linking agent-based models with a toolbox for their analysis, 10.1016/j.envsoft.2010.02.008
  388. Thomas Len, Buckland Stephen T., Newman Ken B., Harwood John, A UNIFIED FRAMEWORK FOR MODELLING WILDLIFE POPULATION DYNAMICS+, 10.1111/j.1467-842x.2005.00369.x
  389. Thorn, Journal of Transdisciplinary Environmental Studies, 5, 1 (2006)
  390. Thurow Russell F., Peterson James T., Guzevich John W., Utility and Validation of Day and Night Snorkel Counts for Estimating Bull Trout Abundance in First- to Third-Order Streams, 10.1577/m05-054.1
  391. Tuljapurkar Shripad, Population Dynamics in Variable Environments, ISBN:9783540524823, 10.1007/978-3-642-51652-8
  392. Turner Thomas F., Trexler Joel C., Ecological and Historical Associations of Gene Flow in Darters (Teleostei: Percidae), 10.2307/2411349
  393. Usher M. B., A Matrix Approach to the Management of Renewable Resources, with Special Reference to Selection Forests, 10.2307/2401258
  394. Van Winkle W., Jager H.I., Railsback S.F., Holcomb B.D., Studley T.K., Baldrige J.E., Individual-based model of sympatric populations of brown and rainbow trout for instream flow assessment: model description and calibration, 10.1016/s0304-3800(98)00065-9
  395. VANDEPUTTE M., MAUGER S., DUPONT-NIVET M., An evaluation of allowing for mismatches as a way to manage genotyping errors in parentage assignment by exclusion, 10.1111/j.1471-8286.2005.01167.x
  396. Verhulst, Correspondance Mathématique et Physique, 10, 113 (1838)
  397. Vik Jon Olav, Borgstrøm Reidar, Skaala Øystein, Cannibalism governing mortality of juvenile brown trout,Salmo trutta, in a regulated stream : CANNIBALISM IN BROWN TROUT, 10.1002/rrr.647
  398. Vilas Román, Bouza C., Castro J., López A., Martínez P., Management units of brown trout from Galicia (NW: Spain) based on spatial genetic structure analysis, 10.1007/s10592-009-9934-9
  399. Vilizzi Lorenzo, Copp Gordon H., Roussel Jean-Marc, Assessing variation in suitability curves and electivity profiles in temporal studies of fish habitat use, 10.1002/rra.767
  400. Vincenzi Simone, Crivellì Alain J., Jesensek Dusan, Rubin Jean-Francois, De Leo Giulio A., Density-dependent individual growth of marble trout (Salmo marmoratus) in the Soca and Idrijca river basins, Slovenia, 10.1007/s10750-006-0470-z
  401. Vincenzi Simone, Crivelli Alain J., Jesensek Dusan, De Leo Giulio A., The role of density-dependent individual growth in the persistence of freshwater salmonid populations, 10.1007/s00442-008-1012-3
  402. Vincenzi Simone, Crivelli Alain J., Jesensek Dusan, Rubin Jean-Francois, Poizat Gilles, De leo Giulio A., Potential factors controlling the population viability of newly introduced endangered marble trout populations, 10.1016/j.biocon.2007.09.013
  403. Vitalis, Genetics, 157, 911 (2001)
  404. Waddle, PHABSIM for Windows (version 1.20) (2001)
  405. WANG JINLIANG, A pseudo-likelihood method for estimating effective population size from temporally spaced samples, 10.1017/s0016672301005286
  406. Wang J., Sibship Reconstruction From Genetic Data With Typing Errors, 10.1534/genetics.166.4.1963
  407. Wang Hui-Yu, Höök Tomas O., ORIGINAL ARTICLE: Eco-genetic model to explore fishing-induced ecological and evolutionary effects on growth and maturation schedules : Eco-genetic model of fishing effects, 10.1111/j.1752-4571.2009.00088.x
  408. Wang, Genetics, 163, 429 (2003)
  409. WAPLES ROBIN S., DO CHI, ldne: a program for estimating effective population size from data on linkage disequilibrium : COMPUTER PROGRAMS, 10.1111/j.1755-0998.2007.02061.x
  410. WAPLES ROBIN S., GAGGIOTTI OSCAR, What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity : WHAT IS A POPULATION?, 10.1111/j.1365-294x.2006.02890.x
  411. Weber Christine, Peter Armin, Zanini Flavio, Spatio-temporal analysis of fish and their habitat: a case study on a highly degraded Swiss river system prior to extensive rehabilitation, 10.1007/s00027-007-0912-3
  412. Wegmann Daniel, Leuenberger Christoph, Neuenschwander Samuel, Excoffier Laurent, ABCtoolbox: a versatile toolkit for approximate Bayesian computations, 10.1186/1471-2105-11-116
  413. Weigel Dana E., Sorensen Peter W., The Influence of Habitat Characteristics on the Longitudinal Distribution of Brook, Brown, and Rainbow Trout in a Small Midwestern Stream, 10.1080/02705060.2001.9663852
  414. Wesche Thomas A., Goertler Chris M., Hubert Wayne A., Modified Habitat Suitability Index Model for Brown Trout in Southeastern Wyoming, 10.1577/1548-8659(1987)7<232:mhsimf>2.0.co;2
  415. Whipple Stuart J, Link Jason S, Garrison Lance P, Fogarty Michael J, Models of predation and fishing mortality in aquatic ecosystems, 10.1046/j.1467-2979.2000.00007.x
  416. WHITELEY ANDREW R., SPRUELL PAUL, ALLENDORF FRED W., Ecological and life history characteristics predict population genetic divergence of two salmonids in the same landscape : PREDICTING GENETIC STRUCTURE IN SALMONIDS, 10.1111/j.1365-294x.2004.02365.x
  417. Whiteley Andrew R., Hastings Kim, Wenburg John K., Frissell Chris A., Martin Jamie C., Allendorf Fred W., Genetic variation and effective population size in isolated populations of coastal cutthroat trout, 10.1007/s10592-010-0083-y
  418. Wiens J. A., Spatial Scaling in Ecology, 10.2307/2389612
  419. WIENS JOHN A., Riverine landscapes: taking landscape ecology into the water, 10.1046/j.1365-2427.2002.00887.x
  420. Wilenski, NetLogo (1999)
  421. Williamson S. C., Bartholow J. M., Stalnaker C. B., Conceptual model for quantifying pre-smolt production from flow-dependent physical habitat and water temperature, 10.1002/rrr.3450080106
  422. Wilson A J, Ferguson M M, Molecular pedigree analysis in natural populations of fishes: approaches, applications, and practical considerations, 10.1139/f02-127
  423. Wilson, Genetics, 163, 1177 (2003)
  424. Wilson Alastair J., Réale Denis, Clements Michelle N., Morrissey Michael M., Postma Erik, Walling Craig A., Kruuk Loeske E. B., Nussey Daniel H., An ecologist’s guide to the animal model, 10.1111/j.1365-2656.2009.01639.x
  425. WOLLEBAEK JENS, HEGGENES JAN, RØED KNUT H, Disentangling stocking introgression and natural migration in brown trout: survival success and recruitment failure in populations with semi-supportive breeding : Stocking introgression and natural migration, 10.1111/j.1365-2427.2010.02485.x
  426. Wright, Genetics, 16, 97 (1931)
  427. Wright, Genetics, 28, 114 (1943)
  428. Wright, Evolution and the genetics of populations, volume 2: theory of gene frequencies (1969)
  429. Yamamoto S., Morita K., Koizumi I., Maekawa K., Genetic Differentiation of White-Spotted Charr (Salvelinus leucomaenis) Populations After Habitat Fragmentation: Spatial–Temporal Changes in Gene Frequencies, 10.1023/b:coge.0000041029.38961.a0
  430. Young Forrest W., Valero-Mora Pedro M., Friendly Michael, Visual Statistics : Seeing Data with Dynamic Interactive Graphics, ISBN:9781118165409, 10.1002/9781118165409
  431. Zorn Troy G., Nuhfer Andrew J., Influences on Brown Trout and Brook Trout Population Dynamics in a Michigan River, 10.1577/t06-032.1
  432. Addley, A mechanistic approach to modeling habitat needs of drift-feeding salmonids (1993)
  433. Addley, Habitat modeling of river ecosystems: multidimensional spatially explicit and dynamic habitat templates at scales relevant to fish (2006)
  434. EXCOFFIER LAURENT, LISCHER HEIDI E. L., Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, 10.1111/j.1755-0998.2010.02847.x
  435. Hardy Olivier J., Vekemans Xavier, spagedi: a versatile computer program to analyse spatial genetic structure at the individual or population levels, 10.1046/j.1471-8286.2002.00305.x
  436. Railsback, Ecology, 83, 1817 (2002)