User menu

Single-molecule fluorescence spectroscopy in (bio)catalysis

Bibliographic reference Roeffaers, Maarten B. J. ; De Cremer, Gert ; Uji-I, Hiroshi ; Muls, Benlot ; Sels, Bert F. ; et. al. Single-molecule fluorescence spectroscopy in (bio)catalysis. In: National Academy of Sciences. Proceedings, Vol. 104, no. 31, p. 12603-12609 (2007)
Permanent URL
  1. de Levie Robert, Stochastics, the Basis of Chemical Dynamics, 10.1021/ed077p771
  2. Xie X. Sunney, Lu H. Peter, Single-molecule Enzymology, 10.1074/jbc.274.23.15967
  3. CHEM COMMUN, 9, 935 (2006)
  4. Smiley R. Derike, Hammes Gordon G., Single Molecule Studies of Enzyme Mechanisms, 10.1021/cr0502955
  5. Craig Douglas B., Arriaga Edgar A., Wong Jerome C. Y., Lu Hui, Dovichi Norman J., Studies on Single Alkaline Phosphatase Molecules:  Reaction Rate and Activation Energy of a Reaction Catalyzed by a Single Molecule and the Effect of Thermal DenaturationThe Death of an Enzyme, 10.1021/ja9540839
  6. Min Wei, English Brian P., Luo Guobin, Cherayil Binny J., Kou S. C., Xie X. Sunney, Fluctuating Enzymes:  Lessons from Single-Molecule Studies, 10.1021/ar040133f
  7. Lu H. P., Single-Molecule Enzymatic Dynamics, 10.1126/science.282.5395.1877
  9. TETRAHEDRONASYMMETR, 10, 3039 (1999)
  10. Berrisford David J., Bolm Carsten, Sharpless K. Barry, Ligand-Accelerated Catalysis, 10.1002/anie.199510591
  11. Sharpless K. Barry, Searching for New Reactivity (Nobel Lecture) Copyright© The Nobel Foundation 2002. We thank the Nobel Foundation, Stockholm, for permission to print this lecture. Adapted with the permission of the editors from “Coelacanths and Catalysis”: K. B. Sharpless, Tetrahedron 1994, 50, 4235., 10.1002/1521-3773(20020617)41:12<2024::aid-anie2024>;2-o
  12. McGarrigle Eoghan M., Gilheany Declan G., Chromium− and Manganese−salen Promoted Epoxidation of Alkenes, 10.1021/cr0306945
  13. Rondelez Yannick, Tresset Guillaume, Tabata Kazuhito V, Arata Hideyuki, Fujita Hiroyuki, Takeuchi Shoji, Noji Hiroyuki, Microfabricated arrays of femtoliter chambers allow single molecule enzymology, 10.1038/nbt1072
  14. Tan Weihong, Yeung Edward S., Monitoring the Reactions of Single Enzyme Molecules and Single Metal Ions, 10.1021/ac970631k
  15. Copéret Christophe, Chabanas Mathieu, Petroff Saint-Arroman Romain, Basset Jean-Marie, Homogeneous and Heterogeneous Catalysis: Bridging the Gap through Surface Organometallic Chemistry, 10.1002/anie.200390072
  16. De Vos Dirk E., Dams Mieke, Sels Bert F., Jacobs Pierre A., Ordered Mesoporous and Microporous Molecular Sieves Functionalized with Transition Metal Complexes as Catalysts for Selective Organic Transformations, 10.1021/cr010368u
  17. Kiel Alexander, Kovacs Janos, Mokhir Andriy, Krämer Roland, Herten Dirk-Peter, Inside Cover: Direct Monitoring of Formation and Dissociation of Individual Metal Complexes by Single-Molecule Fluorescence Spectroscopy (Angew. Chem. Int. Ed. 18/2007), 10.1002/anie.200790076
  18. Over H., Atomic-Scale Structure and Catalytic Reactivity of the RuO2(110) Surface, 10.1126/science.287.5457.1474
  19. Lauritsen Jeppe V., Vang Ronnie T., Besenbacher Flemming, From atom-resolved scanning tunneling microscopy (STM) studies to the design of new catalysts, 10.1016/j.cattod.2005.10.015
  20. Hendriksen Bas L. M., Bobaru Stefania C., Frenken Joost W. M., Looking at Heterogeneous Catalysis at Atmospheric Pressure Using Tunnel Vision, 10.1007/s11244-005-7861-7
  21. Tinnefeld Philip, Sauer Markus, Branching Out of Single-Molecule Fluorescence Spectroscopy: Challenges for Chemistry and Influence on Biology, 10.1002/anie.200300647
  22. Flomenbom O., Velonia K., Loos D., Masuo S., Cotlet M., Engelborghs Y., Hofkens J., Rowan A. E., Nolte R. J. M., Van der Auweraer M., de Schryver F. C., Klafter J., Stretched exponential decay and correlations in the catalytic activity of fluctuating single lipase molecules, 10.1073/pnas.0409039102
  23. Velonia Kelly, Flomenbom Ophir, Loos Davey, Masuo Sadahiro, Cotlet Mircea, Engelborghs Yves, Hofkens Johan, Rowan Alan E., Klafter Joseph, Nolte Roeland J. M., de Schryver Frans C., Single-Enzyme Kinetics of CALB-Catalyzed Hydrolysis, 10.1002/anie.200460625
  24. Roeffaers Maarten B. J., Sels Bert F., Uji-i Hiroshi, De Schryver Frans C., Jacobs Pierre A., De Vos Dirk E., Hofkens Johan, Spatially resolved observation of crystal-face-dependent catalysis by single turnover counting, 10.1038/nature04502
  25. Shaughnessy Kevin H., Kim Paul, Hartwig John F., A Fluorescence-Based Assay for High-Throughput Screening of Coupling Reactions. Application to Heck Chemistry, 10.1021/ja983419m
  26. Su Hui, Yeung Edward S., High-Throughput Screening of Heterogeneous Catalysts by Laser-Induced Fluorescence Imaging, 10.1021/ja001429t
  27. Pap E.H.W., Drummen G.P.C., Winter V.J., Kooij T.W.A., Rijken P., Wirtz K.W.A., Op den Kamp J.A.F., Hage W.J., Post J.A., Ratio-fluorescence microscopy of lipid oxidation in living cells using C11-BODIPY581/591, 10.1016/s0014-5793(99)00696-1
  28. GODDARD J, REYMOND J, Enzyme assays for high-throughput screening, 10.1016/j.copbio.2004.06.008
  29. Meshulam, Journal of Biological Chemistry, 267, 21465 (1992)
  30. Hendrickson H.Stewart, Hendrickson Elizabeth K., Johnson Iain D., Farber Steven A., Intramolecularly Quenched BODIPY-Labeled Phospholipid Analogs in Phospholipase A2 and Platelet-Activating Factor Acetylhydrolase Assays and in Vivo Fluorescence Imaging, 10.1006/abio.1999.4280
  31. Fabbrizzi Luigi, Licchelli Maurizio, Pallavicini Piersandro, Transition Metals as Switches, 10.1021/ar990013l
  32. Rurack Knut, Flipping the light switch ‘ON’ – the design of sensor molecules that show cation-induced fluorescence enhancement with heavy and transition metal ions, 10.1016/s1386-1425(01)00492-9
  33. Callan John F., de Silva A. Prasanna, Magri David C., Luminescent sensors and switches in the early 21st century, 10.1016/j.tet.2005.05.043
  34. Roeffaers Maarten B. J., Sels Bert F., Loos Davey, Kohl Christopher, Müllen Klaus, Jacobs Pierre A., Hofkens Johan, De Vos Dirk E., In Situ Space- and Time-Resolved Sorption Kinetics of Anionic Dyes on Individual LDH Crystals, 10.1002/cphc.200500238
  35. Calzaferri Gion, Huber Stefan, Maas Huub, Minkowski Claudia, Host–Guest Antenna Materials, 10.1002/anie.200300570
  36. Betzig E., Trautman J. K., Near-Field Optics: Microscopy, Spectroscopy, and Surface Modification Beyond the Diffraction Limit, 10.1126/science.257.5067.189
  37. Hell Stefan W, Toward fluorescence nanoscopy, 10.1038/nbt895
  38. Donnert G., Keller J., Medda R., Andrei M. A., Rizzoli S. O., Luhrmann R., Jahn R., Eggeling C., Hell S. W., Macromolecular-scale resolution in biological fluorescence microscopy, 10.1073/pnas.0604965103
  39. Gustafsson M. G. L., Nonlinear structured-illumination microscopy: Wide-field fluorescence imaging with theoretically unlimited resolution, 10.1073/pnas.0406877102
  40. Biophysical Journal Meeting Abstracts, 81, 2378 (2001)
  41. Yildiz Ahmet, Selvin Paul R., Fluorescence Imaging with One Nanometer Accuracy:  Application to Molecular Motors, 10.1021/ar040136s
  42. Muls Benoît, Uji-i Hiroshi, Melnikov Sergey, Moussa Alain, Verheijen Wendy, Soumillion Jean-Philippe, Josemon Jacob, Müllen Klaus, Hofkens Johan, Direct Measurement of the End-to-End Distance of Individual Polyfluorene Polymer Chains, 10.1002/cphc.200500235
  43. Betzig E., Patterson G. H., Sougrat R., Lindwasser O. W., Olenych S., Bonifacino J. S., Davidson M. W., Lippincott-Schwartz J., Hess H. F., Imaging Intracellular Fluorescent Proteins at Nanometer Resolution, 10.1126/science.1127344
  44. Rust Michael J, Bates Mark, Zhuang Xiaowei, Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM), 10.1038/nmeth929
  45. Zhuang X., Correlating Structural Dynamics and Function in Single Ribozyme Molecules, 10.1126/science.1069013
  46. Yang H., Protein Conformational Dynamics Probed by Single-Molecule Electron Transfer, 10.1126/science.1086911
  47. Weisz Paul B., Polyfunctional Heterogeneous Catalysis, Advances in Catalysis (1962) ISBN:9780120078134 p.137-190, 10.1016/s0360-0564(08)60287-4
  48. Blomsma E., Martens J.A., Jacobs P.A., Isomerization and Hydrocracking of Heptane over Bimetallic Bifunctional PtPd/H-Beta and PtPd/USY Zeolite Catalysts, 10.1006/jcat.1997.1473
  49. Sunney Xie X., Single-molecule approach to dispersed kinetics and dynamic disorder: Probing conformational fluctuation and enzymatic dynamics, 10.1063/1.1521159
  50. English Brian P, Min Wei, van Oijen Antoine M, Lee Kang Taek, Luo Guobin, Sun Hongye, Cherayil Binny J, Kou S C, Xie X Sunney, Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited, 10.1038/nchembio759
  51. ANGEW CHEM INT ED, 46, 1706 (2006)
  52. Schmidt T., Schutz G. J., Baumgartner W., Gruber H. J., Schindler H., Imaging of single molecule diffusion., 10.1073/pnas.93.7.2926
  53. Seebacher Christian, Hellriegel Christian, Deeg Fred-Walter, Bräuchle Christoph, Altmaier Stephan, Behrens Peter, Müllen K., Observation of Translational Diffusion of Single Terrylenediimide Molecules in a Mesostructured Molecular Sieve, 10.1021/jp013198y
  54. Kirstein Johanna, Platschek Barbara, Jung Christophe, Brown Ross, Bein Thomas, Bräuchle Christoph, Exploration of nanostructured channel systems with single-molecule probes, 10.1038/nmat1861
  55. Fu Yi, Ye Fangmao, Sanders William G., Collinson Maryanne M., Higgins Daniel A., Single Molecule Spectroscopy Studies of Diffusion in Mesoporous Silica Thin Films, 10.1021/jp054178p
  56. Karger Jorg, Ruthven Douglas M., On the comparison between macroscopic and n.m.r. measurements of intracrystalline diffusion in zeolites, 10.1016/0144-2449(89)90071-7
  57. Zhang Z., Spiering M. M., Trakselis M. A., Ishmael F. T., Xi J., Benkovic S. J., Hammes G. G., Assembly of the bacteriophage T4 primosome: Single-molecule and ensemble studies, 10.1073/pnas.0500327102
  58. Kikteva Tanya, Star Dmitry, Zhao Zhihong, Baisley Tammy L., Leach Gary W., Molecular Orientation, Aggregation, and Order in Rhodamine Films at the Fused Silica/Air Interface, 10.1021/jp9835824
  59. Uji-i Hiroshi, Melnikov Sergey M., Deres Ania, Bergamini Giacomo, De Schryver Frans, Herrmann Andreas, Müllen Klaus, Enderlein Jörg, Hofkens Johan, Visualizing spatial and temporal heterogeneity of single molecule rotational diffusion in a glassy polymer by defocused wide-field imaging, 10.1016/j.polymer.2005.11.094
  60. Denayer Joeri F. M., Ocakoglu Refik A., Arik Ilbige C., Kirschhock Christine E. A., Martens Johan A., Baron Gino V., Rotational Entropy Driven Separation of Alkane/Isoalkane Mixtures in Zeolite Cages, 10.1002/anie.200454058
  61. van Dijk Erik M. H. P., Hernando Jordi, García-López Juan-José, Crego-Calama Mercedes, Reinhoudt David N., Kuipers Laurens, García-Parajó María F., van Hulst Niek F., Single-Molecule Pump-Probe Detection Resolves Ultrafast Pathways in Individual and Coupled Quantum Systems, 10.1103/physrevlett.94.078302
  62. Sels Bert F., De Vos Dirk E., Jacobs Pierre A., Hydrotalcite-like anionic clays in catalytic organic reactions, 10.1081/cr-120001809
  63. KASSIES R., VAN DER WERF K. O., LENFERINK A., HUNTER C. N., OLSEN J. D., SUBRAMANIAM V., OTTO C., Combined AFM and confocal fluorescence microscope for applications in bio-nanotechnology, 10.1111/j.0022-2720.2005.01428.x
  64. Stöckle Raoul M., Suh Yung Doug, Deckert Volker, Zenobi Renato, Nanoscale chemical analysis by tip-enhanced Raman spectroscopy, 10.1016/s0009-2614(99)01451-7
  65. Yeo Boon-Siang, Zhang Weihua, Vannier Christophe, Zenobi Renato, Enhancement of Raman Signals with Silver-Coated Tips, 10.1366/000370206778664662
  66. Kühn Sergei, Håkanson Ulf, Rogobete Lavinia, Sandoghdar Vahid, Enhancement of Single-Molecule Fluorescence Using a Gold Nanoparticle as an Optical Nanoantenna, 10.1103/physrevlett.97.017402
  67. Lehmann Enrico, Chmelik Christian, Scheidt Holger, Vasenkov Sergey, Staudte Brigitte, Kärger Jörg, Kremer Friedrich, Zadrozna Gabriela, Kornatowski Jan, Regular Intergrowth in the AFI-Type Crystals:  Influence on the Intracrystalline Adsorbate Distribution As Observed by Interference and FTIR-Microscopy, 10.1021/ja026400z
  68. Hartschuh Achim, Sánchez Erik J., Xie X. Sunney, Novotny Lukas, High-Resolution Near-Field Raman Microscopy of Single-Walled Carbon Nanotubes, 10.1103/physrevlett.90.095503
  69. Anderson Neil, Hartschuh Achim, Cronin Steve, Novotny Lukas, Nanoscale Vibrational Analysis of Single-Walled Carbon Nanotubes, 10.1021/ja045190i
  70. Gryczynski Ignacy, Malicka Joanna, Gryczynski Zygmunt, Lakowicz Joseph R., Surface Plasmon-Coupled Emission with Gold Films, 10.1021/jp040221h
  71. Anger Pascal, Bharadwaj Palash, Novotny Lukas, Enhancement and Quenching of Single-Molecule Fluorescence, 10.1103/physrevlett.96.113002
  72. Hatanaka Koji, Miura Toshifumi, Fukumura Hiroshi, White X-ray pulse emission of alkali halide aqueous solutions irradiated by focused femtosecond laser pulses: a spectroscopic study on electron temperatures as functions of laser intensity, solute concentration, and solute atomic number, 10.1016/j.chemphys.2003.10.036
  73. Bargheer M., Zhavoronkov N., Woerner M., Elsaesser T., Recent Progress in Ultrafast X-ray Diffraction, 10.1002/cphc.200500591
  74. HENDRIKSEN B, BOBARU S, FRENKEN J, Bistability and oscillations in CO oxidation studied with scanning tunnelling microscopy inside a reactor, 10.1016/j.cattod.2005.02.041
  75. Hofkens J., Hotta J., Sasaki K., Masuhara H., Taniguchi T., Miyashita T., Molecular Association by the Radiation Pressure of a Focused Laser Beam:  Fluorescence Characterization of Pyrene-Labeled PNIPAM, 10.1021/ja963830e
  76. Tsuboi Yasuyuki, Nishino Masayuki, Sasaki Tetsuya, Kitamura Noboru, Poly(N-Isopropylacrylamide) Microparticles Produced by Radiation Pressure of a Focused Laser Beam:  A Structural Analysis by Confocal Raman Microspectroscopy Combined with a Laser-Trapping Technique, 10.1021/jp044894b
  77. Dol Georg C., Tsuda Kenji, Weener Jan-Willem, Bartels Marcel J., Asavei Theodor, Gensch Thomas, Hofkens Johan, Latterini Loredana, Schenning Albert P. H. J., Meijer Bert W., De Schryver Frans C., Merging of Hard Spheres by Phototriggered Micromanipulation, 10.1002/1521-3773(20010504)40:9<1710::aid-anie17100>;2-n
  78. Brixner T., Damrauer N. H., Niklaus P., Gerber G., 10.1038/35102037
  79. Herek Jennifer L., Wohlleben Wendel, Cogdell Richard J., Zeidler Dirk, Motzkus Marcus, Quantum control of energy flow in light harvesting, 10.1038/417533a