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GRANAR, a new computational tool to better understand the functional importance of root anatomy

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  1. Lobet G., Couvreur V., Meunier F., Javaux M., Draye X., Plant Water Uptake in Drying Soils, 10.1104/pp.113.233486
  2. Schneider Hannah M., Wojciechowski Tobias, Postma Johannes A., Brown Kathleen M., Lücke Andreas, Zeisler Viktoria, Schreiber Lukas, Lynch Jonathan P., Root cortical senescence decreases root respiration, nutrient content and radial water and nutrient transport in barley : Cortical senescence reduces respiration, nutrient content and radial transport, 10.1111/pce.12933
  3. HACHEZ CHARLES, VESELOV DMITRY, YE QING, REINHARDT HAGEN, KNIPFER THORSTEN, FRICKE WIELAND, CHAUMONT FRANÇOIS, Short-term control of maize cell and root water permeability through plasma membrane aquaporin isoforms : Maize root plasma membrane aquaporins, 10.1111/j.1365-3040.2011.02429.x
  4. Vetterlein Doris, Doussan Claude, Root age distribution: how does it matter in plant processes? A focus on water uptake, 10.1007/s11104-016-2849-6
  5. Burton Amy L., Brown Kathleen M., Lynch Jonathan P., Phenotypic Diversity of Root Anatomical and Architectural Traits in Species, 10.2135/cropsci2012.07.0440
  6. Tai Huanhuan, Lu Xin, Opitz Nina, Marcon Caroline, Paschold Anja, Lithio Andrew, Nettleton Dan, Hochholdinger Frank, Transcriptomic and anatomical complexity of primary, seminal, and crown roots highlight root type-specific functional diversity in maize (Zea maysL.), 10.1093/jxb/erv513
  7. Bomfim N.N., Graciano-Ribeiro D., Nassar N.M.A., Genetic diversity of root anatomy in wild and cultivated Manihot species, 10.4238/vol10-2gmr1093
  8. McDonald M. P., Galwey N. W., Colmer T. D., Similarity and diversity in adventitious root anatomy as related to root aeration among a range of wetland and dryland grass species, 10.1046/j.0016-8025.2001.00817.x
  9. Ma Zeqing, Guo Dali, Xu Xingliang, Lu Mingzhen, Bardgett Richard D., Eissenstat David M., McCormack M. Luke, Hedin Lars O., Evolutionary history resolves global organization of root functional traits, 10.1038/nature25783
  10. Hose Elenor, Steudle Ernst, Hartung Wolfram, Abscisic acid and hydraulic conductivity of maize roots: a study using cell- and root-pressure probes, 10.1007/s004250000412
  11. Pound Michael P., French Andrew P., Wells Darren M., Bennett Malcolm J., Pridmore Tony P., CellSeT: Novel Software to Extract and Analyze Structured Networks of Plant Cells from Confocal Images, 10.1105/tpc.112.096289
  12. Passot Sixtine, Couvreur Valentin, Meunier Félicien, Draye Xavier, Javaux Mathieu, Leitner Daniel, Pagès Loïc, Schnepf Andrea, Vanderborght Jan, Lobet Guillaume, Connecting the dots between computational tools to analyse soil-root water relations, 10.1101/312918
  13. Schneider Caroline A, Rasband Wayne S, Eliceiri Kevin W, NIH Image to ImageJ: 25 years of image analysis, 10.1038/nmeth.2089
  14. Burton Amy L., Williams Michael, Lynch Jonathan P., Brown Kathleen M., RootScan: Software for high-throughput analysis of root anatomical traits, 10.1007/s11104-012-1138-2
  15. Front. Plant Sci, 5, 790 (2014)
  16. Chopin Joshua, Laga Hamid, Huang Chun Yuan, Heuer Sigrid, Miklavcic Stanley J., RootAnalyzer: A Cross-Section Image Analysis Tool for Automated Characterization of Root Cells and Tissues, 10.1371/journal.pone.0137655
  17. Atkinson Jonathan A., Wells Darren M., An Updated Protocol for High Throughput Plant Tissue Sectioning, 10.3389/fpls.2017.01721
  18. Hachez Charles, Moshelion Menachem, Zelazny Enric, Cavez Damien, Chaumont François, Localization and Quantification of Plasma Membrane Aquaporin Expression in Maize Primary Root: A Clue to Understanding their Role as Cellular Plumbers, 10.1007/s11103-006-9022-1
  19. Fayette, A. & Reynolds, M. S. Herbaceous Dicot Root: Mature Ranunculus. Berkshire Community College Bioscience Image Library (2014).
  20. GAO KUN, CHEN FANJUN, YUAN LIXING, ZHANG FUSUO, MI GUOHUA, A comprehensive analysis of root morphological changes and nitrogen allocation in maize in response to low nitrogen stress : Maize root morphology under low nitrogen stress, 10.1111/pce.12439
  21. Miller D. M., Studies of Root Function in Zea mays: IV. Effects of Applied Pressure on the Hydraulic Conductivity and Volume Flow through the Excised Root, 10.1104/pp.77.1.168
  22. Steudle E., Oren R., Schulze E.-D., Water Transport in Maize Roots : Measurement of Hydraulic Conductivity, Solute Permeability, and of Reflection Coefficients of Excised Roots Using the Root Pressure Probe, 10.1104/pp.84.4.1220
  23. Shone M. G. T., Clarkson D. T., Rectification of radial water flow in the hypodermis of nodal roots ofZea mays, 10.1007/bf02139943
  24. Meunier F., Couvreur V., Draye X., Vanderborght J., Javaux M., Towards quantitative root hydraulic phenotyping: novel mathematical functions to calculate plant-scale hydraulic parameters from root system functional and structural traits, 10.1007/s00285-017-1111-z
  25. Frensch J., Steudle E., Axial and Radial Hydraulic Resistance to Roots of Maize (Zea mays L.), 10.1104/pp.91.2.719
  26. Schambil Fred, Woermann Dietrich, Radial transport of water across cortical sleeves of excised roots ofZea mays L., 10.1007/bf00963819
  27. YE QING, STEUDLE ERNST, Oxidative gating of water channels (aquaporins) in corn roots, 10.1111/j.1365-3040.2005.01423.x
  28. DOUSSAN C, Modelling of the Hydraulic Architecture of Root Systems: An Integrated Approach to Water Absorption—Distribution of Axial and Radial Conductances in Maize, 10.1006/anbo.1997.0541
  29. ENSTONE DARYL E., PETERSON CAROL A., Suberin lamella development in maize seedling roots grown in aerated and stagnant conditions, 10.1111/j.1365-3040.2005.01286.x
  30. Pradal Christophe, Dufour-Kowalski Samuel, Boudon Frédéric, Fournier Christian, Godin Christophe, OpenAlea: a visual programming and component-based software platform for plant modelling, 10.1071/fp08084
  31. Chopard, J. , Godin, C. & Traas, J. Towards a formal expression of morphogenesis: a mechanics based integration of cell growth at tissue scale. in Proceedings of the 7th International Workshop on Information Processing in Cells and Tissues 387–399 (, 2007).
  32. Dyson Rosemary J., Vizcay-Barrena Gema, Band Leah R., Fernandes Anwesha N., French Andrew P., Fozard John A., Hodgman T. Charlie, Kenobi Kim, Pridmore Tony P., Stout Michael, Wells Darren M., Wilson Michael H., Bennett Malcolm J., Jensen Oliver E., Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending, 10.1111/nph.12764
  33. Rieger M, Root system hydraulic conductivity in species with contrasting root anatomy, 10.1093/jexbot/50.331.201
  34. Tardieu François, Simonneau Thierry, Muller Bertrand, The Physiological Basis of Drought Tolerance in Crop Plants: A Scenario-Dependent Probabilistic Approach, 10.1146/annurev-arplant-042817-040218
  35. Lynch Jonathan P., Chimungu Joseph G., Brown Kathleen M., Root anatomical phenes associated with water acquisition from drying soil: targets for crop improvement, 10.1093/jxb/eru162
  36. LYNCH JONATHAN P., Root phenes that reduce the metabolic costs of soil exploration: opportunities for 21st century agriculture : New roots for agriculture, 10.1111/pce.12451
  37. Fan Mingshou, Bai Ruiqin, Zhao Xuefeng, Zhang Jianhua, Aerenchyma Formed Under Phosphorus Deficiency Contributes to the Reduced Root Hydraulic Conductivity in Maize Roots, 10.1111/j.1744-7909.2007.00450.x
  38. Lynch Jonathan P., Brown Kathleen M., Root strategies for phosphorus acquisition, Plant Ecophysiology (2008) ISBN:9781402084348 p.83-116, 10.1007/978-1-4020-8435-5_5
  39. Burton Amy L., Lynch Jonathan P., Brown Kathleen M., Spatial distribution and phenotypic variation in root cortical aerenchyma of maize (Zea mays L.), 10.1007/s11104-012-1453-7
  40. de Souza T. Corrêa, de Castro E. Mauro, César Magalhães P., De Oliveira Lino L., Trindade Alves E., de Albuquerque P. Emílio Pereira, Morphophysiology, morphoanatomy, and grain yield under field conditions for two maize hybrids with contrasting response to drought stress, 10.1007/s11738-013-1355-1
  41. York L. M., Galindo-Castaneda T., Schussler J. R., Lynch J. P., Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress, 10.1093/jxb/erv074
  42. Li Yangyang, Sperry John S., Shao Mingan, Hydraulic conductance and vulnerability to cavitation in corn (Zea mays L.) hybrids of differing drought resistance, 10.1016/j.envexpbot.2009.02.001
  43. Lewis Ann M., Boose Emery R., Estimating Volume Flow Rates Through Xylem Conduits, 10.2307/2446063
  44. HUANG BINGRU, NOBEL PARK S., Hydraulic conductivity and anatomy along lateral roots of cacti: changes with soil water status, 10.1111/j.1469-8137.1993.tb03762.x
  45. Salih A. A., Ali I. A., Lux A., Luxová M., Cohen Y., Sugimoto Y., Inanaga S., Rooting, Water Uptake, and Xylem Structure Adaptation to Drought of Two Sorghum Cultivars, 10.2135/cropsci1999.0011183x003900010027x
  46. Hachez Charles, Moshelion Menachem, Zelazny Enric, Cavez Damien, Chaumont François, Localization and Quantification of Plasma Membrane Aquaporin Expression in Maize Primary Root: A Clue to Understanding their Role as Cellular Plumbers, 10.1007/s11103-006-9022-1
  47. Moreno-Ortega, B. Developmental instability in lateral roots of maize: a multi-scale analysis. (Montpellier SupAgro, 2016).
  48. Schnepf Andrea, Leitner Daniel, Landl Magdalena, Lobet Guillaume, Mai Trung Hieu, Morandage Shehan, Sheng Cheng, Zörner Mirjam, Vanderborght Jan, Vereecken Harry, CRootBox: a structural–functional modelling framework for root systems, 10.1093/aob/mcx221
  49. Barczi Jean-François, Rey Hervé, Griffon Sébastien, Jourdan Christophe, DigR: a generic model and its open source simulation software to mimic three-dimensional root-system architecture diversity, 10.1093/aob/mcy018
  50. Postma Johannes A., Kuppe Christian, Owen Markus R., Mellor Nathan, Griffiths Marcus, Bennett Malcolm J., Lynch Jonathan P., Watt Michelle, Open Sim Root : widening the scope and application of root architectural models, 10.1111/nph.14641
  51. Turner, R. & Turner, M. R. Package ‘deldir’. (2019).
  52. Wickham, H. & Chang, W. devtools: Tools to Make Developing R Packages Easier; 2016. URL R package version 1, 381 (2019).
  53. Pateiro-López Beatriz, Rodríguez-Casal Alberto, Generalizing the Convex Hull of a Sample: TheRPackagealphahull, 10.18637/jss.v034.i05
  54. Sterratt David C., Lyngholm Daniel, Willshaw David J., Thompson Ian D., Standard Anatomical and Visual Space for the Mouse Retina: Computational Reconstruction and Transformation of Flattened Retinae with the Retistruct Package, 10.1371/journal.pcbi.1002921
  55. Zhu G. L., Steudle E., Water Transport across Maize Roots : Simultaneous Measurement of Flows at the Cell and Root Level by Double Pressure Probe Technique, 10.1104/pp.95.1.305
  56. Enstone Daryl E., Peterson Carol A., Ma Fengshan, Root Endodermis and Exodermis: Structure, Function, and Responses to the Environment, 10.1007/s00344-003-0002-2
  57. Ehlert C., Maurel C., Tardieu F., Simonneau T., Aquaporin-Mediated Reduction in Maize Root Hydraulic Conductivity Impacts Cell Turgor and Leaf Elongation Even without Changing Transpiration, 10.1104/pp.108.131458
  58. Ma Fengshan, Peterson Carol A., Frequencies of plasmodesmata in Allium cepa L. roots: implications for solute transport pathways, 10.1093/jexbot/52.358.1051
  59. Bret-Harte M. S., Silk W. K., Nonvascular, Symplasmic Diffusion of Sucrose Cannot Satisfy the Carbon Demands of Growth in the Primary Root Tip of Zea mays L, 10.1104/pp.105.1.19
  60. Bret-Harte M. S., Silk W. K., Nonvascular, Symplasmic Diffusion of Sucrose Cannot Satisfy the Carbon Demands of Growth in the Primary Root Tip of Zea mays L, 10.1104/pp.105.1.19
  61. Couvreur Valentin, Faget Marc, Lobet Guillaume, Javaux Mathieu, Chaumont François, Draye Xavier, Going with the Flow: Multiscale Insights into the Composite Nature of Water Transport in Roots, 10.1104/pp.18.01006
  62. Chimungu J. G., Brown K. M., Lynch J. P., Reduced Root Cortical Cell File Number Improves Drought Tolerance in Maize, 10.1104/pp.114.249037
  63. Chimungu J. G., Brown K. M., Lynch J. P., Large Root Cortical Cell Size Improves Drought Tolerance in Maize, 10.1104/pp.114.250449
Bibliographic reference Heymans, Adrien. GRANAR, a new computational tool to better understand the functional importance of root anatomy. In: bioRxiv, Vol. -, no.-, p. - (2019)
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