User menu

Accès à distance ? S'identifier sur le proxy UCLouvain

Iranian beet necrotic yellow vein virus (BNYVV): pronounced diversity of the p25 coding region in A-type BNYVV and identification of P-type BNYVV lacking a fifth RNA species.

Primary tabs

Mehrvar, Mohsen [UCL] Valizadeh, J Koenig, R Bragard, Claude [UCL]

Beet necrotic yellow vein virus (BNYVV) was detected in 288 of the 392 samples collected in Iran. A-type BNYVV was detected most frequently. The p25 coding region on BNYVV RNA-3 was amplified by RT-PCR and sequenced. Nine different variants of the highly variable amino acid tetrad at positions 67-70 of p25 were identified, i.e. ACHG, AHHG, AYHG, ALHG, AFHR, AFHG, AHYG, VLHG and VHHG. These are more different tetrad variants than have been reported from any other country. The first three variants were found most commonly. In 23 out of the 288 BNYVV-positive samples, we detected P-type BNYVV that had previously been identified only in France, Kazakhstan and recently in the UK. Surprisingly, none of these samples contained the fifth RNA species usually associated with P-type BNYVV in other countries. As in other BNYVV P-type sources, the p25 amino acid tetrad in positions 67-70 of the Iranian P-type consists of SYHG.

Document type Article de périodique (Journal article) – Article de recherche – Journal Article, Research Support, Non-U.S. Gov't
Access type Accès restreint
Publication date 2009
Language Anglais
Journal information "Archives of Virology" - Vol. 154, no. 3, p. 501-6 (2009)
Peer reviewed yes
Publisher Springer Wien ((Austria) Vienna)
issn 0304-8608
e-issn 1432-8798
Publication status Publié
Affiliation UCL - SST/ELI/ELIM - Applied Microbiology
MESH Subject Viral Proteins - genetics ; Sequence Homology, Amino Acid ; Sequence Analysis, DNA ; Sequence Alignment ; Reverse Transcriptase Polymerase Chain Reaction ; RNA, Viral - genetics ; Polymorphism, Genetic ; Plant Viruses - classification - genetics - isolation & purification ; Phylogeny ; Molecular Sequence Data ; Iran ; Genome, Viral ; Cluster Analysis ; Beta vulgaris - virology ; Amino Acid Sequence
Links
  1. Acosta-Leal R, Rush CM (2007) Mutations associated with resistance-breaking isolates of Beet necrotic yellow vein virus and their allelic discrimination using TaqMan technology. Phytopathology 97:325–330
  2. Asher M. J. C., Rhizomania, The Sugar Beet Crop (1993) ISBN:9789401066549 p.311-346, 10.1007/978-94-009-0373-9_9
  3. Bouzoubaa S, Guilley H, Jonard G, Richards K, Putz C (1985) Nucleotide sequence analysis of RNA-3 and RNA-4 of Beet necrotic yellow vein virus, isolates f2 and g1. J Gen Virol 66:1553–1564
  4. Bouzoubaa S, Ziegler V, Beck D, Guilley H, Richards K, Jonard G (1986) Nucleotide sequence of Beet necrotic yellow vein virus RNA-2. J Gen Virol 67:1689–1700
  5. Bouzoubaa S, Quillet L, Guilley H, Jonard G, Richards K (1987) Nucleotide sequence of Beet necrotic yellow vein virus RNA-1. J Gen Virol 68:615–626
  6. Chiba S, Miyanishi M, Tamada T (2002) Single amino acid changes in the P25 protein of Beet necrotic yellow vein virus determine resistance responses of Beta vulgaris spp. maritima. In: Rush CM, Merz U (eds) Proceedings of the 5th symposium of the international working group on plant viruses with fungal vectors, 22–25 July 2002. Zurich, pp 5–8
  7. Chiba S, Miyanishi M, Andica IB, Kondo H, Tamada T (2008) Identification of amino acids of the Beet necrotic yellow vein virus p25 protein required for induction of the resistance responses in leaves of Beta vulgaris plants. J Gen Virol 89:1314–1323
  8. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucl Acid Res 12:387–395
  9. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
  10. Harju VA, Mumford RA, Blockley A, Boonham N, Clover GRG, Weekes R, Henry CM (2002) Occurrence in the United Kingdom of Beet necrotic yellow vein virus isolates which contain RNA 5. Plant Pathol 51:811
  11. Izadpanah K, Hashemi P, Kamran R, Pakniat M, Sahandpour A, Masumi M (1996) Widespread occurrence of rhizomania-like disease of sugar beet in Fars. Iran J Plant Pathol 32:200–206
  12. Jupin I, Guilley H, Richards KE, Jonard G (1992) Two proteins encoded by Beet necrotic yellow vein virus RNA 3 influence symptom phenotype on leaves. EMBO J 11:479–488
  13. Klein E, Link D, Schirmer A, Erhardt M, Gilmer D (2007) Sequence variation within Beet necrotic yellow vein virus p25 protein influences its oligomerization and isolate pathogenicity on Tetragonia expansa. Virus Res 126:53–61
  14. Koenig R, Jarausch W, Li Y, Commandeur U, Burgermeister W, Gehrke M, Luddecke P (1991) Effect of recombinant Beet necrotic yellow vein virus with different RNA compositions on mechanically inoculated sugar beets. J Gen Virol 72:2243–2246
  15. Koenig R, Lüddecke P, Haeberle AM (1995) Detection of Beet necrotic yellow vein virus strains, variants and mixed infections by examining single-strand conformation polymorphisms of immunocapture RT-PCR products. J Gen Virol 76:2051–2055
  16. Koenig R, Haeberle AM, Commandeur U (1997) Detection and characterization of a distinct type of Beet necrotic yellow vein virus RNA 5 in a sugar beet growing area in Europe. Arch Virol 142:1499–1504
  17. Koenig R, Lennefors BL (2000) Molecular analyses of European A, B and P type sources of Beet necrotic yellow vein virus and detection of the rare P type in Kazakhstan. Arch Virol 145:1561–1570
  18. Koenig R, Kastirr U, Holtschulte B, Deml G, Varrelmann M (2008) Distribution of various types and P25 subtypes of Beet necrotic yellow vein virus in Germany and other European countries. Arch Virol 153:2139–2144
  19. Koenig R, Loss S, Specht J, Varrelmann M, Lüddecke P, Deml G (2009) A single C/U nucleotide substitution changing alanine to valine in the Beet necrotic yellow vein virus P25 protein promotes increased virus accumulation in roots of mechanically inoculated, partially resistant sugar beet seedlings. J Gen Virol (in press)
  20. Kruse M, Koenig R, Hoffman A, Kaufmann A, Commandeur U, Solevyev AG, Savenkov I, Burgermeister W (1994) Restriction fragment length polymorphism analysis of reverse transcription-PCR products reveals the existance of two major strain groups of Beet necrotic yellow vein virus. J Gen Virol 75:1835–1842
  21. Lemaire O, Beuve M, Weber C, Schirmer A, Link D, Meunier A, Bragard C, Gilmer D (2003) Etiology and molecular epidemiology of a severe rhizomania disease occurring in confined locations in Europe: hypothesis for the implication of the RNA-3 and/or-5 of Beet necrotic yellow vein virus (BNYVV)-P pathotype. In: Proceedings of the 1st joint IIRBASSBT congress, 26 February–1 March 2003. San Antonio, pp 303–318
  22. Lennefors L, Lindsten K, Koenig R (2000) First record of A and B type Beet necrotic yellow vein virus in sugar beets in Sweden. Eur J Plant Pathol 106:199–201
  23. Lennefors BL, Savenkov EI, Mukosa SB, Valkonen JPT (2005) Sequence divergence of four soilborne sugarbeet-infecting viruses. Virus Genes 31:57–64
  24. Li DW, Yu JL, Han CG, Lui T, Quin SC, Lui Y, Koenig R (1999) Detection and nucleotide sequence analysis of Beet necrotic yellow vein virus RNA 5 isolated from China. Chin J Biotech 15:461–465
  25. Li M, Liu T, Wang B, Han C, Li D, Yu J (2008) Phylogenetic analysis of Beet necrotic yellow vein virus isolates from China. Virus Genes 36:429–432
  26. Liu H, Lewellen RT (2007) Distribution and molecular characterization of resistance-breaking isolates of Beet necrotic yellow vein virus in the United States. Plant Dis 91:847–851
  27. Meunier A, Schmit JF, Stas A, Kutluk N, Bragard C (2003) Multiplex RT-PCR for the simultaneous detection of Beet necrotic yellow vein virus, Beet soilborne virus, Beet virus Q and their vector Polymyxa betae KESKIN on sugar beet. Appl Environ Microbiol 69:2356–2360
  28. Meunier A (2005). Typing of Belgian Beet necrotic yellow vein virus, characterization of RNA-2 and RNA-3 coding regions and relationsips with different steps of the virus cycle. PhD thesis, UCL, Louvain-la-Neuve, Belgium, 122p
  29. Meunier A, Schmit JF, Bragard C (2005) Comparison of the Beet necrotic yellow vein virus P75 nucleotide sequences of Belgian type A and type B sources. Virus Res 108:15–22
  30. Miyanishi M, Kusume T, Saito M, Tamada T (1999) Evidence for three groups of sequence variants of Beet necrotic yellow vein virus RNA 5. Arch Virol 144:879–892
  31. Ratti C, Resca R, Lanzoni C, Rubies Autonell C (2006) Amino acid changes in the 25 protein of Beet necrotic yellow vein virus. In: Rush CM, Merz U (eds) Proceedings of the 6th symposium of the international working group on plant viruses with fungal vectors, 5–7 September 2005. Bologna, p 53
  32. Rush CM, Liu HY, Lewellen RT, Acosta-Leal R (2006) The continuing saga of rhizomania of sugar beets in the United States. Plant Dis 90:4–15
  33. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
  34. Schirmer A, Link D, Cognat V, Moury B, Beuve M, Meunier A, Bragard C, Gilmer D, Lemaire O (2005) Phylogenetic analysis of isolates of Beet necrotic yellow vein virus collected worldwide. J Gen Virol 86:2897–2911
  35. Sohi H, Maleki M (2004) Evidence for presence of types A and B of Beet necrotic yellow vein virus (BNYVV) in Iran. Virus Genes 29:353–358
  36. Tamada T, Shirako Y, Abe H, Saito M, Kiguchi T, Harada T (1989) Production and pathogenicity of isolates of Beet necrotic yellow vein virus with different numbers of RNA components. J Gen Virol 70:3399–3409
  37. Tamada T, Kusume T, Uchino H, Kiguchi T, Saito M (1996) Evidence that Beet necrotic yellow vein virus RNA-5 is involved in symptom development of sugar beet roots. In: Sherwood JL, Rush CM (eds) Proceedings of the 3th symposium of the international working group on plant viruses with fungal vectors, Dundee, 6–7 August 1996, pp 49–52
  38. Tamada T, Uchino T, Kusume T, Saito M (1999) RNA 3 deletion mutants of Beet necrotic yellow vein virus do not cause rhizomania disease in sugar beets. Phytopathology 89:1000–1006
  39. Tamada T, Miyanishi M, Kondo H, Chiba H, Han G (2002) Pathogenicity and molecular variability of Beet necrotic yellow vein virus isolates from Europe, Japan, China and The United States. In: Rush CM, Merz U (eds) Proceedings of the 5th symposium of the international working group on plant viruses with fungal vectors, Zurich, 22–25 July 2002, pp 13–16
  40. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599
  41. Vetter G, Hily JM, Klein E, Schmidlin L, Haas M, Merkle T, Gilmer D (2004) Nucleo-cytoplasmic shuttling of the Beet necrotic yellow vein virus RNA-3 encoded P25 protein. J Gen Virol 85:2459–2469
  42. Ward L, Koenig R, Budge G, Garrido C, McGrath C, Stubbley H, Boonham H (2007) Occurrence of two different types of RNA-5-containing Beet necrotic yellow vein virus in the UK. Arch Virol 152:59–73
Bibliographic reference Mehrvar, Mohsen ; Valizadeh, J ; Koenig, R ; Bragard, Claude. Iranian beet necrotic yellow vein virus (BNYVV): pronounced diversity of the p25 coding region in A-type BNYVV and identification of P-type BNYVV lacking a fifth RNA species.. In: Archives of Virology, Vol. 154, no. 3, p. 501-6 (2009)
Permanent URL http://hdl.handle.net/2078.1/21465