User menu

S'identifier sur le proxy UCLouvain :

S'identifier sur le proxy Saint-Louis :

Measuring root system traits of wheat in 2D images to parameterize 3D root architecture models

  • Open access
  • PDF
  • 9.10 M
  1. ABADÍA-FENOLL F., CASERO P. J., LLORET P. G., VIDAL M. R., Development of Lateral Primordia in Decapitated Adventitious Roots of Allium cepa, 10.1093/oxfordjournals.aob.a087178
  2. Atkinson Jonathan A., Lobet Guillaume, Noll Manuel, Meyer Patrick E., Griffiths Marcus, Wells Darren M., Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies, 10.1093/gigascience/gix084
  3. Atkinson Jonathan A., Wingen Luzie U., Griffiths Marcus, Pound Michael P., Gaju Oorbessy, Foulkes M. John, Le Gouis Jacques, Griffiths Simon, Bennett Malcolm J., King Julie, Wells Darren M., Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat, 10.1093/jxb/erv006
  4. Bao Y., Aggarwal P., Robbins N. E., Sturrock C. J., Thompson M. C., Tan H. Q., Tham C., Duan L., Rodriguez P. L., Vernoux T., Mooney S. J., Bennett M. J., Dinneny J. R., Plant roots use a patterning mechanism to position lateral root branches toward available water, 10.1073/pnas.1400966111
  5. Barlow P. W., Adam J. S., The position and growth of lateral roots on cultured root axes of tomato,Lycopersicon esculentum (Solanaceae), 10.1007/bf00936340
  6. Bauke S. L., Landl M., Koch M., Hofmann D., Nagel K. A., Siebers N., Schnepf A., Amelung W., Macropore effects on phosphorus acquisition by wheat roots – a rhizotron study, 10.1007/s11104-017-3194-0
  7. Bingham Ian J., Wu Lianhai, Simulation of wheat growth using the 3D root architecture model SPACSYS: Validation and sensitivity analysis, 10.1016/j.eja.2011.01.003
  8. Bouma Tjeerd J., Yanai Ruth D., Elkin Adrienne D., Hartmond Ulrich, Flores-Alva Dora E., Eissenstat David M., Estimating age-dependent costs and benefits of roots with contrasting life span: comparing apples and oranges, 10.1046/j.1469-8137.2001.00128.x
  9. Clark R. T., MacCurdy R. B., Jung J. K., Shaff J. E., McCouch S. R., Aneshansley D. J., Kochian L. V., Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform, 10.1104/pp.110.169102
  10. Clausnitzer V., Hopmans J. W., Simultaneous modeling of transient three-dimensional root growth and soil water flow, 10.1007/bf00010082
  11. Delory Benjamin M., Baudson Caroline, Brostaux Yves, Lobet Guillaume, du Jardin Patrick, Pagès Loïc, Delaplace Pierre, archiDART: an R package for the automated computation of plant root architectural traits, 10.1007/s11104-015-2673-4
  12. Diggle A. J., ROOTMAP—a model in three-dimensional coordinates of the growth and structure of fibrous root systems, 10.1007/bf02376780
  13. Doussan Claude, Pierret Alain, Garrigues Emmanuelle, Pagès Loïc, Water Uptake by Plant Roots: II – Modelling of Water Transfer in the Soil Root-system with Explicit Account of Flow within the Root System – Comparison with Experiments, 10.1007/s11104-004-7904-z
  14. Draye X., Consequences of root growth kinetics and vascular structure on the distribution of lateral roots, 10.1046/j.0016-8025.2002.00924.x
  15. Dunbabin Vanessa M., Diggle Art J., Rengel Zdenko, van Hugten Robert, 10.1023/a:1014939512104
  16. Dunbabin Vanessa M., Postma Johannes A., Schnepf Andrea, Pagès Loïc, Javaux Mathieu, Wu Lianhai, Leitner Daniel, Chen Ying L., Rengel Zed, Diggle Art J., Modelling root–soil interactions using three–dimensional models of root growth, architecture and function, 10.1007/s11104-013-1769-y
  17. FITTER A. H., STICKLAND T. R., HARVEY M. L., WILSON G. W., Architectural analysis of plant root systems 1. Architectural correlates of exploitation efficiency, 10.1111/j.1469-8137.1991.tb00018.x
  18. Forde B. G., Is it good noise? The role of developmental instability in the shaping of a root system, 10.1093/jxb/erp265
  19. Gao Shiyu, Pan William L., Koenig Richard T., Integrated Root System Age in Relation to Plant Nutrient Uptake Activity, 10.2134/agronj1998.00021962009000040011x
  20. Ge Zhenyang, Rubio Gerardo, Lynch Jonathan P, 10.1023/a:1014987710937
  21. Hargreaves Caroline E., Gregory Peter J., Bengough A. Glyn, Measuring root traits in barley (Hordeum vulgare ssp. vulgare and ssp. spontaneum) seedlings using gel chambers, soil sacs and X-ray microtomography, 10.1007/s11104-008-9780-4
  22. Ito Kaori, Tanakamaru Koji, Morita Shigenori, Abe Jun, Inanaga Shinobu, Lateral root development, including responses to soil drying, of maize (Zea mays) and wheat (Triticum aestivum) seminal roots, 10.1111/j.1399-3054.2006.00657.x
  23. Javaux Mathieu, Schröder Tom, Vanderborght Jan, Vereecken Harry, Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake, 10.2136/vzj2007.0115
  24. Judd Lesley, Jackson Brian, Fonteno William, Advancements in Root Growth Measurement Technologies and Observation Capabilities for Container-Grown Plants, 10.3390/plants4030369
  25. Kuchenbuch Rolf O., Ingram Keith T., Image analysis for non-destructive and non-invasive quantification of root growth and soil water content in rhizotrons, 10.1002/1522-2624(200210)165:5<573::aid-jpln573>;2-w
  26. Kuijken René C.P., van Eeuwijk Fred. A., Marcelis Leo F.M., Bouwmeester Harro J., Root phenotyping: from component trait in the lab to breeding: Table 1., 10.1093/jxb/erv239
  27. Kutschera L (1960) Wurzelatlas mitteleuropäischer Ackerunkräuter und Kulturpflanzen. DLG-Verlag, Frankfurt/Main, pp 124, 574
  28. Kutschera L, Lichtenegger E, Sobotik M (2009) Wurzelatlas der Kulturpflanzen gemäßigter Gebiete: mit Arten des Feldgemüsebaues. DLG-Verlag Frankfurt/Main, pp 222, 226–227
  29. Landl Magdalena, Huber Katrin, Schnepf Andrea, Vanderborght Jan, Javaux Mathieu, Glyn Bengough A., Vereecken Harry, A new model for root growth in soil with macropores, 10.1007/s11104-016-3144-2
  30. Le Bot Jacques, Serra Valérie, Fabre José, Draye Xavier, Adamowicz Stéphane, Pagès Loïc, DART: a software to analyse root system architecture and development from captured images, 10.1007/s11104-009-0005-2
  31. Leitner D., Felderer B., Vontobel P., Schnepf A., Recovering Root System Traits Using Image Analysis Exemplified by Two-Dimensional Neutron Radiography Images of Lupine, 10.1104/pp.113.227892
  32. Leitner Daniel, Klepsch Sabine, Bodner Gernot, Schnepf Andrea, A dynamic root system growth model based on L-Systems : Tropisms and coupling to nutrient uptake from soil, 10.1007/s11104-010-0284-7
  33. Liang J., Zhang J., Wong M. H., Effects of air-filled soil porosity and aeration on the initiation and growth of secondary roots of maize (Zea mays), 10.1007/bf02415520
  34. Lynch Jonathan P., TURNER REVIEW No. 14. Roots of the Second Green Revolution, 10.1071/bt06118
  35. Lynch Jonathan P., Nielsen Kai L., Davis Robert D., Jablokow Andrei G., 10.1023/a:1004276724310
  36. Mairhofer S., Zappala S., Tracy S. R., Sturrock C., Bennett M., Mooney S. J., Pridmore T., RooTrak: Automated Recovery of Three-Dimensional Plant Root Architecture in Soil from X-Ray Microcomputed Tomography Images Using Visual Tracking, 10.1104/pp.111.186221
  37. Mooney S. J., Pridmore T. P., Helliwell J., Bennett M. J., Developing X-ray Computed Tomography to non-invasively image 3-D root systems architecture in soil, 10.1007/s11104-011-1039-9
  38. Nagel Kerstin A., Putz Alexander, Gilmer Frank, Heinz Kathrin, Fischbach Andreas, Pfeifer Johannes, Faget Marc, Blossfeld Stephan, Ernst Michaela, Dimaki Chryssa, Kastenholz Bernd, Kleinert Ann-Katrin, Galinski Anna, Scharr Hanno, Fiorani Fabio, Schurr Ulrich, GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons, 10.1071/fp12023
  39. Nagel Kerstin A., Bonnett David, Furbank Robert, Walter Achim, Schurr Ulrich, Watt Michelle, Simultaneous effects of leaf irradiance and soil moisture on growth and root system architecture of novel wheat genotypes: implications for phenotyping, 10.1093/jxb/erv290
  40. Nakamoto Tomomi, Plagiogravitropism of maize roots, 10.1007/bf00008077
  41. Nye PH, Tinker PB (1977) Solute movement in the soil-root system. Univ of California Press, p 342
  42. PAGÈS LOÏC, Links between root developmental traits and foraging performance : Root developmental traits and foraging performance, 10.1111/j.1365-3040.2011.02371.x
  43. Pagès Loïc, Pellerin Sylvain, Evaluation of parameters describing the root system architecture of field grown maize plants (Zea mays L.) : II. Density, length, and branching of first-order lateral roots, 10.1007/bf00010068
  44. Pagès Loïc, Picon-Cochard Catherine, Modelling the root system architecture of Poaceae. Can we simulate integrated traits from morphological parameters of growth and branching?, 10.1111/nph.12904
  45. Pagès Loïc, Vercambre Gilles, Drouet Jean-Louis, Lecompte François, Collet Catherine, Le Bot Jacques, Root Typ: a generic model to depict and analyse the root system architecture, 10.1023/b:plso.0000016540.47134.03
  46. Pellerin Sylvain, Pagès Loïc, Evaluation of parameters describing the root system architecture of field grown maize plants (Zea mays L.) : I. Elongation of seminal and nodal roots and extension of their branched zone, 10.1007/bf00010067
  47. Pellerin S, Length of the apical unbranched zone of maize axile roots: Its relationship to root elongation rate, 10.1016/0098-8472(94)00043-5
  48. Pohlmeier A, Javaux M, Vereecken H, Haber-Pohlmeier S (2013) Magnetic resonance imaging techniques for visualization of root growth and root water uptake processes. In: Anderson SH, Hopmans JW (eds) Soil–water–root processes: advances in tomography and imaging, pp 137–156. Publ, SSSA Spec, p 61
  49. Popova Liyana, van Dusschoten Dagmar, Nagel Kerstin A., Fiorani Fabio, Mazzolai Barbara, Plant root tortuosity: an indicator of root path formation in soil with different composition and density, 10.1093/aob/mcw057
  50. Postma J. A., Dathe A., Lynch J. P., The Optimal Lateral Root Branching Density for Maize Depends on Nitrogen and Phosphorus Availability, 10.1104/pp.113.233916
  51. Rascher Uwe, Blossfeld Stephan, Fiorani Fabio, Jahnke Siegfried, Jansen Marcus, Kuhn Arnd J., Matsubara Shizue, Märtin Lea L. A., Merchant Andrew, Metzner Ralf, Müller-Linow Mark, Nagel Kerstin A., Pieruschka Roland, Pinto Francisco, Schreiber Christina M., Temperton Vicky M., Thorpe Michael R., Dusschoten Dagmar Van, Van Volkenburgh Elizabeth, Windt Carel W., Schurr Ulrich, Non-invasive approaches for phenotyping of enhanced performance traits in bean, 10.1071/fp11164
  52. Rich Sarah M., Watt Michelle, Soil conditions and cereal root system architecture: review and considerations for linking Darwin and Weaver, 10.1093/jxb/ert043
  53. Roose T., Schnepf A., Mathematical models of plant-soil interaction, 10.1098/rsta.2008.0198
  54. Schenk M. K., Barber S. A., Phosphate Uptake by Corn as Affected by Soil Characteristics and Root Morphology1, 10.2136/sssaj1979.03615995004300050012x
  55. Smith S., De Smet I., Root system architecture: insights from Arabidopsis and cereal crops, 10.1098/rstb.2011.0234
  56. Tardieu Francois, Pellerin Sylvain, Trajectory of the nodal roots of maize in fields with low mechanical constraints, 10.1007/bf00010929
  57. Tracy Saoirse R., Black Colin R., Roberts Jeremy A., Sturrock Craig, Mairhofer Stefan, Craigon Jim, Mooney Sacha J., Quantifying the impact of soil compaction on root system architecture in tomato (Solanum lycopersicum) by X-ray micro-computed tomography, 10.1093/aob/mcs031
  58. Tracy S. R., Roberts J. A., Black C. R., McNeill A., Davidson R., Mooney S. J., The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography, 10.1093/jxb/erp386
  59. Tricot Frédérique, Crozat Yves, Pellerin Sylvain, Root system growth and nodule establishment on pea (Pisum sativumL.), 10.1093/jxb/48.11.1935
  60. Volder Astrid, Smart David R., Bloom Arnold J., Eissenstat David M., Rapid decline in nitrate uptake and respiration with age in fine lateral roots of grape: implications for root efficiency and competitive effectiveness, 10.1111/j.1469-8137.2004.01222.x
  61. Weaver John E., Crist John W., Jean Frank Covert, Development and activities of roots of crop plants; a study in crop ecology,, 10.5962/bhl.title.79313
  62. Weaver J. E., Kramer Joseph, Reed Maud, Development of Root and Shoot of Winter Wheat Under Field Environment, 10.2307/1929162
  63. Wenzel Walter W., Wieshammer Gottfried, Fitz Walter J., Puschenreiter Markus, 10.1023/a:1013395122730
  64. Wu Jie, Pagès Loïc, Wu Qian, Yang Bo, Guo Yan, Three-dimensional architecture of axile roots of field-grown maize, 10.1007/s11104-014-2307-2
  65. Wu L., McGechan M.B., McRoberts N., Baddeley J.A., Watson C.A., SPACSYS: Integration of a 3D root architecture component to carbon, nitrogen and water cycling—Model description, 10.1016/j.ecolmodel.2006.08.010
  66. Wu L., McGechan M.B., Watson C.A., Baddeley J.A., Developing Existing Plant Root System Architecture Models to Meet Future Agricultural Challenges, Advances in Agronomy (2005) ISBN:9780120007837 p.181-219, 10.1016/s0065-2113(04)85004-1
  67. Yu Peng, Gutjahr Caroline, Li Chunjian, Hochholdinger Frank, Genetic Control of Lateral Root Formation in Cereals, 10.1016/j.tplants.2016.07.011
Bibliographic reference Landl, Magdalena ; Schnepf, Andrea ; Vanderborght, Jan ; Bengough, A. Glyn ; Bauke, Sara L. ; et. al. Measuring root system traits of wheat in 2D images to parameterize 3D root architecture models. In: Plant and Soil, Vol. 1, no.1, p. 1-21 (2018)
Permanent URL