The mammalian gene Nit1 (nitrilase-like protein 1) encodes a protein that is highly conserved in eukaryotes and is thought to act as a tumor suppressor. Despite being ∼35% sequence identical to ω-amidase (Nit2), the Nit1 protein does not hydrolyze efficiently α-ketoglutaramate (a known physiological substrate of Nit2), and its actual enzymatic function has so far remained a puzzle. In the present study, we demonstrate that both the mammalian Nit1 and its yeast ortholog are amidases highly active toward deaminated glutathione (dGSH; i.e., a form of glutathione in which the free amino group has been replaced by a carbonyl group). We further show that Nit1-KO mutants of both human and yeast cells accumulate dGSH and the same compound is excreted in large amounts in the urine of Nit1-KO mice. Finally, we show that several mammalian aminotransferases (transaminases), both cytosolic and mitochondrial, can form dGSH via a common (if slow) side-reaction and provide indirect evidence that transaminases are mainly responsible for dGSH formation in cultured mammalian cells. Altogether, these findings delineate a typical instance of metabolite repair, whereby the promiscuous activity of some abundant enzymes of primary metabolism leads to the formation of a useless and potentially harmful compound, which needs a suitable "repair enzyme" to be destroyed or reconverted into a useful metabolite. The need for a dGSH repair reaction does not appear to be limited to eukaryotes: We demonstrate that Nit1 homologs acting as excellent dGSH amidases also occur in Escherichia coli and other glutathione-producing bacteria.
Pekarsky Y., Campiglio M., Siprashvili Z., Druck T., Sedkov Y., Tillib S., Draganescu A., Wermuth P., Rothman J. H., Huebner K., Buchberg A. M., Mazo A., Brenner C., Croce C. M., Nitrilase and Fhit homologs are encoded as fusion proteins in Drosophila melanogaster and Caenorhabditis elegans, 10.1073/pnas.95.15.8744
Galperin M. Y., 'Conserved hypothetical' proteins: prioritization of targets for experimental study, 10.1093/nar/gkh885
Galperin Michael Y., Koonin Eugene V., From complete genome sequence to ‘complete’ understanding?, 10.1016/j.tibtech.2010.05.006
Linster Carole L, Van Schaftingen Emile, Hanson Andrew D, Metabolite damage and its repair or pre-emption, 10.1038/nchembio.1141
Van Schaftingen Emile, Rzem Rim, Marbaix Alexandre, Collard François, Veiga-da-Cunha Maria, Linster Carole L., Metabolite proofreading, a neglected aspect of intermediary metabolism, 10.1007/s10545-012-9571-1
Rzem R., Veiga-da-Cunha M., Noel G., Goffette S., Nassogne M.-C., Tabarki B., Scholler C., Marquardt T., Vikkula M., Van Schaftingen E., A gene encoding a putative FAD-dependent L-2-hydroxyglutarate dehydrogenase is mutated in L-2-hydroxyglutaric aciduria, 10.1073/pnas.0404840101
Van Schaftingen E., Rzem R., Veiga-da-Cunha M., l-2-Hydroxyglutaric aciduria, a disorder of metabolite repair, 10.1007/s10545-008-1042-3
Collard François, Baldin Francesca, Gerin Isabelle, Bolsée Jennifer, Noël Gaëtane, Graff Julie, Veiga-da-Cunha Maria, Stroobant Vincent, Vertommen Didier, Houddane Amina, Rider Mark H, Linster Carole L, Van Schaftingen Emile, Bommer Guido T, A conserved phosphatase destroys toxic glycolytic side products in mammals and yeast, 10.1038/nchembio.2104
Gerlt John A., Allen Karen N., Almo Steven C., Armstrong Richard N., Babbitt Patricia C., Cronan John E., Dunaway-Mariano Debra, Imker Heidi J., Jacobson Matthew P., Minor Wladek, Poulter C. Dale, Raushel Frank M., Sali Andrej, Shoichet Brian K., Sweedler Jonathan V., The Enzyme Function Initiative, 10.1021/bi201312u
Meister, J Biol Chem, 200, 571 (1953)
Meister, J Biol Chem, 224, 137 (1957)
Pace H.C, Hodawadekar S.C, Draganescu A, Huang J, Bieganowski P, Pekarsky Y, Croce C.M, Brenner C, Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers, 10.1016/s0960-9822(00)00621-7
Hersh Louis B., Rat liver ι-amidase. Purification and properties, 10.1021/bi00791a014
Buell Mary V., Hansen Raymond E., Reaction of Pyridoxal-5-phosphate with Aminothiols, 10.1021/ja01508a018
Bar-Even Arren, Noor Elad, Savir Yonatan, Liebermeister Wolfram, Davidi Dan, Tawfik Dan S., Milo Ron, The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters, 10.1021/bi2002289
Semba Shuho, Han Shuang-Yin, Qin Haiyan R., McCorkell Kelly A., Iliopoulos Dimitrios, Pekarsky Yuri, Druck Teresa, Trapasso Francesco, Croce Carlo M., Huebner Kay, Biological Functions of Mammalian Nit1, the Counterpart of the Invertebrate NitFhit Rosetta Stone Protein, a Possible Tumor Suppressor, 10.1074/jbc.m603590200
Cooper Arthur J.L., Pinto John T., Krasnikov Boris F., Niatsetskaya Zoya V., Han Qian, Li Jianyong, Vauzour David, Spencer Jeremy P.E., Substrate specificity of human glutamine transaminase K as an aminotransferase and as a cysteine S-conjugate β-lyase, 10.1016/j.abb.2008.02.038
Donini Stefano, Ferrari Manuela, Fedeli Chiara, Faini Marco, Lamberto Ilaria, Marletta Ada Serena, Mellini Lara, Panini Michela, Percudani Riccardo, Pollegioni Loredano, Caldinelli Laura, Petrucco Stefania, Peracchi Alessio, Recombinant production of eight human cytosolic aminotransferases and assessment of their potential involvement in glyoxylate metabolism, 10.1042/bj20090748
Schiroli Davide, Peracchi Alessio, A subfamily of PLP-dependent enzymes specialized in handling terminal amines, 10.1016/j.bbapap.2015.02.023
Malherbe Pari, Alberati-Giani Daniela, Köhler Christer, Cesura Andrea M., Identification of a mitochondrial form of kynurenine aminotransferase/glutamine transaminase K from rat brain, 10.1016/0014-5793(95)00546-l
Korangath P., Teo W. W., Sadik H., Han L., Mori N., Huijts C. M., Wildes F., Bharti S., Zhang Z., Santa-Maria C. A., Tsai H., Dang C. V., Stearns V., Bhujwalla Z. M., Sukumar S., Targeting Glutamine Metabolism in Breast Cancer with Aminooxyacetate, 10.1158/1078-0432.ccr-14-1200
Sun Jin, Okumura Hiroshi, Yearsley Martha, Frankel Wendy, Fong Louise Y., Druck Teresa, Huebner Kay, Nit1 and Fhit tumor suppressor activities are additive, 10.1002/jcb.22207
Barglow Katherine T., Cravatt Benjamin F., Substrate Mimicry in an Activity-Based Probe That Targets the Nitrilase Family of Enzymes, 10.1002/anie.200603187
Marlaire Simon, Van Schaftingen Emile, Veiga-da-Cunha Maria, C7orf10 encodes succinate-hydroxymethylglutarate CoA-transferase, the enzyme that converts glutarate to glutaryl-CoA, 10.1007/s10545-013-9632-0
Liu Hejun, Gao Yongxiang, Zhang Mengying, Qiu Xiaoting, Cooper Arthur J. L., Niu Liwen, Teng Maikun, Structures of enzyme–intermediate complexes of yeast Nit2: insights into its catalytic mechanism and different substrate specificity compared with mammalian Nit2, 10.1107/s0907444913009347
Johnson Todd, Newton Gerald L., Fahey Robert C., Rawat Mamta, Unusual production of glutathione in Actinobacteria, 10.1007/s00203-008-0423-1
Novogrodsky, J Biol Chem, 239, 879 (1964)
Mason J. M., Naidu M. D., Barcia M., Porti D., Chavan S. S., Chu C. C., IL-4-Induced Gene-1 Is a Leukocyte L-Amino Acid Oxidase with an Unusual Acidic pH Preference and Lysosomal Localization, 10.4049/jimmunol.173.7.4561
Jösch C., Klotz L.-O., Sies H., Identification of Cytosolic Leucyl Aminopeptidase (EC 3.4.11.1) as the Major Cysteinylglycine-Hydrolysing Activity in Rat Liver, 10.1515/bc.2003.023
Cooper AJ (1997) Glutathione in the brain: Disorders of glutathione metabolism. The Molecular and Genetic Basis of Neurological Disease, eds Rosenberg R Prusiner S DiMauro S Barchi R (Butterworth-Heinemann, Boston), 2nd Ed, pp 1195–1230.
Keillor Jeffrey W., Castonguay Roselyne, Lherbet Christian, Gamma‐Glutamyl Transpeptidase Substrate Specificity and Catalytic Mechanism, Methods in Enzymology (2005) ISBN:9780121828066 p.449-467, 10.1016/s0076-6879(05)01027-x
Barglow Katherine T., Saikatendu Kumar S., Bracey Michael H., Huey Ruth, Morris Garrett M., Olson Arthur J., Stevens Raymond C., Cravatt Benjamin F., Functional Proteomic and Structural Insights into Molecular Recognition in the Nitrilase Family Enzymes†‡, 10.1021/bi801786y
delCardayré Stephen B., Stock Kevin P., Newton Gerald L., Fahey Robert C., Davies Julian E., Coenzyme A Disulfide Reductase, the Primary Low Molecular Weight Disulfide Reductase fromStaphylococcus aureus : PURIFICATION AND CHARACTERIZATION OF THE NATIVE ENZYME, 10.1074/jbc.273.10.5744
Griffith O. W., Meister A., Excretion of cysteine and gamma-glutamylcysteine moieties in human and experimental animal gamma-glutamyl transpeptidase deficiency., 10.1073/pnas.77.6.3384
Wang, Oncotarget, 7, 21381 (2016)
Mittag Sonnhild, Valenta Tomas, Weiske Jörg, Bloch Laura, Klingel Susanne, Gradl Dietmar, Wetzel Franziska, Chen Yuan, Petersen Iver, Basler Konrad, Huber Otmar, A novel role for the tumour suppressor Nitrilase1 modulating the Wnt/β-catenin signalling pathway, 10.1038/celldisc.2015.39
Kitagawa M., Ara T., Arifuzzaman M., Ioka-Nakamichi T., Inamoto E., Toyonaga H., Mori H., Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research, 10.1093/dnares/dsi012
Gemayel Rita, Fortpied Juliette, Rzem Rim, Vertommen Didier, Veiga-da-Cunha Maria, Van Schaftingen Emile, Many fructosamine 3-kinase homologues in bacteria are ribulosamine/erythrulosamine 3-kinases potentially involved in protein deglycation : Bacterial fructosamine 3-kinase homologues, 10.1111/j.1742-4658.2007.05948.x
Jaisson Stéphane, Veiga-da-Cunha Maria, Van Schaftingen Emile, Molecular identification of ω-amidase, the enzyme that is functionally coupled with glutamine transaminases, as the putative tumor suppressor Nit2, 10.1016/j.biochi.2009.07.002
Krasnikov Boris F., Chien Chin-Hsiang, Nostramo Regina, Pinto John T., Nieves Edward, Callaway Myrasol, Sun Jin, Huebner Kay, Cooper Arthur J.L., Identification of the putative tumor suppressor Nit2 as ω-amidase, an enzyme metabolically linked to glutamine and asparagine transamination, 10.1016/j.biochi.2009.07.003
Meister, J Biol Chem, 215, 441 (1955)
Cooper Arthur J. L., Meister Alton, Snell Esmond E., The Glutamine Transaminase-ω-Amidase Pathwa, 10.3109/10409237709102560
Cooper Arthur J. L., Shurubor Yevgeniya I., Dorai Thambi, Pinto John T., Isakova Elena P., Deryabina Yulia I., Denton Travis T., Krasnikov Boris F., Erratum to: ω-Amidase: an underappreciated, but important enzyme in l-glutamine and l-asparagine metabolism; relevance to sulfur and nitrogen metabolism, tumor biology and hyperammonemic diseases, 10.1007/s00726-015-2115-x
Bibliographic reference
Peracchi, Alessio ; Veiga da Cunha, Maria ; Kuhara, Tomiko ; Ellens, Kenneth W ; Paczia, Nicole ; et. al. Nit1 is a metabolite repair enzyme that hydrolyzes deaminated glutathione.. In: Proceedings of the National academy of sciences of the United States of America, Vol. 114, no.16, p. E3233-E3242 (2017)