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Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait.

Bibliographic reference DECOCK, A ; ONGENAERT, M ; DE WILDE, B ; Brichard, Bénédicte ; NOGUERA, R ; et. al. Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait.. In: Epigenetics, Vol. 11, no.Sep 06 (2016)
Permanent URL http://hdl.handle.net/2078.1/181674
  1. Evans Audrey E., D'Angio Giulio J., Randolph Judson, A proposed staging for children with neuroblastoma.Children's cancer study group A, 10.1002/1097-0142(197102)27:2<374::aid-cncr2820270221>3.0.co;2-g
  2. Evans Audrey E., Albo Vincent, D'Angio Giulio J., Finklestein Jerry Z., Leiken Sanford, Santulli Thomas, Weiner John, Hammond G. Denman, Factors influencing survival of children with nonmetastatic neuroblastoma, 10.1002/1097-0142(197608)38:2<661::aid-cncr2820380206>3.0.co;2-m
  3. Brodeur G M, Pritchard J, Berthold F, Carlsen N L, Castel V, Castelberry R P, De Bernardi B, Evans A E, Favrot M, Hedborg F, Revisions of the international criteria for neuroblastoma diagnosis, staging, and response to treatment., 10.1200/jco.1993.11.8.1466
  4. London W.B., Castleberry R.P., Matthay K.K., Look A.T., Seeger R.C., Shimada H., Thorner P., Brodeur G., Maris J.M., Reynolds C.P., Cohn S.L., Evidence for an Age Cutoff Greater Than 365 Days for Neuroblastoma Risk Group Stratification in the Children's Oncology Group, 10.1200/jco.2005.05.571
  5. Monclair Tom, Brodeur Garrett M., Ambros Peter F., Brisse Hervé J., Cecchetto Giovanni, Holmes Keith, Kaneko Michio, London Wendy B., Matthay Katherine K., Nuchtern Jed G., von Schweinitz Dietrich, Simon Thorsten, Cohn Susan L., Pearson Andrew D.J., The International Neuroblastoma Risk Group (INRG) Staging System: An INRG Task Force Report, 10.1200/jco.2008.16.6876
  6. Brodeur Garrett M., Bagatell Rochelle, Mechanisms of neuroblastoma regression, 10.1038/nrclinonc.2014.168
  7. Decock Anneleen, Ongenaert Maté, Van Criekinge Wim, Speleman Frank, Vandesompele Jo, DNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing, 10.1038/sdata.2016.4
  8. Decock Anneleen, Ongenaert Maté, Cannoodt Robrecht, Verniers Kimberly, De Wilde Bram, Laureys Geneviève, Van Roy Nadine, Berbegall Ana P., Bienertova-Vasku Julie, Bown Nick, Clément Nathalie, Combaret Valérie, Haber Michelle, Hoyoux Claire, Murray Jayne, Noguera Rosa, Pierron Gaelle, Schleiermacher Gudrun, Schulte Johannes H., Stallings Ray L., Tweddle Deborah A., Group (CCLG) for the Children’s Cancer and Leukaemi, Preter Katleen De, Speleman Frank, Vandesompele Jo, Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma, 10.18632/oncotarget.6477
  9. Zhang B., Kirov S., Snoddy J., WebGestalt: an integrated system for exploring gene sets in various biological contexts, 10.1093/nar/gki475
  10. Wang Jing, Duncan Dexter, Shi Zhiao, Zhang Bing, WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013, 10.1093/nar/gkt439
  11. Hiyama Eiso, Hiyama Keiko, Yokoyama Takashi, Matsuura Yuichiro, Piatyszek Mieczyslaw A., Shay Jerry W., Correlating telomerase activity levels with human neuroblastoma outcomes, 10.1038/nm0395-249
  12. Onitake Yoshiyuki, Hiyama Eiso, Kamei Naomi, Yamaoka Hiroaki, Sueda Taijiro, Hiyama Keiko, Telomere biology in neuroblastoma: telomere binding proteins and alternative strengthening of telomeres, 10.1016/j.jpedsurg.2009.07.046
  13. Valentijn Linda J, Koster Jan, Zwijnenburg Danny A, Hasselt Nancy E, van Sluis Peter, Volckmann Richard, van Noesel Max M, George Rani E, Tytgat Godelieve A M, Molenaar Jan J, Versteeg Rogier, TERT rearrangements are frequent in neuroblastoma and identify aggressive tumors, 10.1038/ng.3438
  14. Peifer Martin, Hertwig Falk, Roels Frederik, Dreidax Daniel, Gartlgruber Moritz, Menon Roopika, Krämer Andrea, Roncaioli Justin L., Sand Frederik, Heuckmann Johannes M., Ikram Fakhera, Schmidt Rene, Ackermann Sandra, Engesser Anne, Kahlert Yvonne, Vogel Wenzel, Altmüller Janine, Nürnberg Peter, Thierry-Mieg Jean, Thierry-Mieg Danielle, Mariappan Aruljothi, Heynck Stefanie, Mariotti Erika, Henrich Kai-Oliver, Gloeckner Christian, Bosco Graziella, Leuschner Ivo, Schweiger Michal R., Savelyeva Larissa, Watkins Simon C., Shao Chunxuan, Bell Emma, Höfer Thomas, Achter Viktor, Lang Ulrich, Theissen Jessica, Volland Ruth, Saadati Maral, Eggert Angelika, de Wilde Bram, Berthold Frank, Peng Zhiyu, Zhao Chen, Shi Leming, Ortmann Monika, Büttner Reinhard, Perner Sven, Hero Barbara, Schramm Alexander, Schulte Johannes H., Herrmann Carl, O’Sullivan Roderick J., Westermann Frank, Thomas Roman K., Fischer Matthias, Telomerase activation by genomic rearrangements in high-risk neuroblastoma, 10.1038/nature14980
  15. Blasco María A., The epigenetic regulation of mammalian telomeres, 10.1038/nrg2047
  16. Vera E, Canela A, Fraga M F, Esteller M, Blasco M A, Epigenetic regulation of telomeres in human cancer, 10.1038/onc.2008.289
  17. Oberthuer André, Berthold Frank, Warnat Patrick, Hero Barbara, Kahlert Yvonne, Spitz Rüdiger, Ernestus Karen, König Rainer, Haas Stefan, Eils Roland, Schwab Manfred, Brors Benedikt, Westermann Frank, Fischer Matthias, Customized Oligonucleotide Microarray Gene Expression–Based Classification of Neuroblastoma Patients Outperforms Current Clinical Risk Stratification, 10.1200/jco.2006.06.1879
  18. Subramanian A., Tamayo P., Mootha V. K., Mukherjee S., Ebert B. L., Gillette M. A., Paulovich A., Pomeroy S. L., Golub T. R., Lander E. S., Mesirov J. P., Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles, 10.1073/pnas.0506580102
  19. Goeman J. J., van de Geer S. A., de Kort F., van Houwelingen H. C., A global test for groups of genes: testing association with a clinical outcome, 10.1093/bioinformatics/btg382
  20. Gómez Soledad, Castellano Giancarlo, Mayol Gemma, Suñol Mariona, Queiros Ana, Bibikova Marina, Nazor Kristopher L, Loring Jeanne F, Lemos Isadora, Rodríguez Eva, de Torres Carmen, Mora Jaume, Martín-Subero José I, Lavarino Cinzia, DNA methylation fingerprint of neuroblastoma reveals new biological and clinical insights, 10.2217/epi.15.49
  21. Figueroa M. E., Skrabanek L., Li Y., Jiemjit A., Fandy T. E., Paietta E., Fernandez H., Tallman M. S., Greally J. M., Carraway H., Licht J. D., Gore S. D., Melnick A., MDS and secondary AML display unique patterns and abundance of aberrant DNA methylation, 10.1182/blood-2009-01-200519
  22. Heuck C. J., Mehta J., Bhagat T., Gundabolu K., Yu Y., Khan S., Chrysofakis G., Schinke C., Tariman J., Vickrey E., Pulliam N., Nischal S., Zhou L., Bhattacharyya S., Meagher R., Hu C., Maqbool S., Suzuki M., Parekh S., Reu F., Steidl U., Greally J., Verma A., Singhal S. B., Myeloma Is Characterized by Stage-Specific Alterations in DNA Methylation That Occur Early during Myelomagenesis, 10.4049/jimmunol.1202493
  23. Krams Matthias, Hero Barbara, Berthold Frank, Parwaresch Reza, Harms Dieter, Rudolph Pierre, Full-Length Telomerase Reverse Transcriptase Messenger RNA Is an Independent Prognostic Factor in Neuroblastoma, 10.1016/s0002-9440(10)63896-5
  24. Buckley Patrick G., Das Sudipto, Bryan Kenneth, Watters Karen M., Alcock Leah, Koster Jan, Versteeg Rogier, Stallings Raymond L., Genome-wide DNA methylation analysis of neuroblastic tumors reveals clinically relevant epigenetic events and large-scale epigenomic alterations localized to telomeric regions, 10.1002/ijc.25584
  25. Hertwig Falk, Peifer Martin, Fischer Matthias, Telomere maintenance is pivotal for high-risk neuroblastoma, 10.1080/15384101.2015.1125243
  26. Blattler Adam, Farnham Peggy J., Cross-talk between Site-specific Transcription Factors and DNA Methylation States, 10.1074/jbc.r113.512517
  27. Campanero M. R., Armstrong M. I., Flemington E. K., CpG methylation as a mechanism for the regulation of E2F activity, 10.1073/pnas.100340697
  28. Mann I. K., Chatterjee R., Zhao J., He X., Weirauch M. T., Hughes T. R., Vinson C., CG methylated microarrays identify a novel methylated sequence bound by the CEBPB ATF4 heterodimer that is active in vivo, 10.1101/gr.146654.112
  29. Alonso Marta M., Fueyo Juan, Shay Jerry W., Aldape Kenneth D., Jiang Hong, Lee Ok-Hee, Johnson David G., Xu Jing, Kondo Yasuko, Kanzawa Takao, Kyo Satoru, Bekele B. Nebiyou, Zhou Xian, Nigro Janice, McDonald J. Matthew, Yung W. K. Alfred, Gomez-Manzano Candelaria, Expression of Transcription Factor E2F1 and Telomerase in Glioblastomas: Mechanistic Linkage and Prognostic Significance, 10.1093/jnci/dji340
  30. Tríbulo Celeste, Aybar Manuel J., Sánchez Sara S., Mayor Roberto, A balance between the anti-apoptotic activity of Slug and the apoptotic activity of msx1 is required for the proper development of the neural crest, 10.1016/j.ydbio.2004.07.041
  31. Monsoro-Burq Anne-Hélène, Wang Estee, Harland Richard, Msx1 and Pax3 Cooperate to Mediate FGF8 and WNT Signals during Xenopus Neural Crest Induction, 10.1016/j.devcel.2004.12.017
  32. Hoyt Peter R., Bartholomew Christopher, Davis Amy J., Yutzey Katherine, Gamer Laura W., Potter S.Steven, Ihle James N., Mucenski Michael L., The Evil proto-oncogene is required at midgestation for neural, heart, and paraxial mesenchyme development, 10.1016/s0925-4773(97)00057-9
  33. Kazama H, Cell Growth Differ, 10, 565 (1999)
  34. Quach D. H., Oliveira-Fernandes M., Gruner K. A., Tourtellotte W. G., A Sympathetic Neuron Autonomous Role for Egr3-Mediated Gene Regulation in Dendrite Morphogenesis and Target Tissue Innervation, 10.1523/jneurosci.5481-12.2013
  35. Akahoshi Eiichi, Yoshimura Seiko, Ishihara-Sugano Mitsuko, Over-expression of AhR (aryl hydrocarbon receptor) induces neural differentiation of Neuro2a cells: neurotoxicology study, 10.1186/1476-069x-5-24
  36. Wu Pei-Yi, Liao Yung-Feng, Juan Hsueh-Fen, Huang Hsuan-Cheng, Wang Bo-Jeng, Lu Yen-Lin, Yu I-Shing, Shih Yu-Yin, Jeng Yung-Ming, Hsu Wen-Ming, Lee Hsinyu, Aryl Hydrocarbon Receptor Downregulates MYCN Expression and Promotes Cell Differentiation of Neuroblastoma, 10.1371/journal.pone.0088795
  37. Ruffle Rebecca A., Mapley Andrew C., Malik Manmeet K., Labruzzo Salvatore V., Chabla Janet M., Jose Riya, Hallas Brian H., Yu Han-Gang, Horowitz Judith M., Torres German, Distribution of constitutively expressed MEF-2A in adult rat and human nervous systems, 10.1002/syn.20266
  38. Mao Zixu, Nadal-Ginard Bernardo, Functional and Physical Interactions between Mammalian Achaete-Scute Homolog 1 and Myocyte Enhancer Factor 2A, 10.1074/jbc.271.24.14371
  39. He Ye, Casaccia-Bonnefil Patrizia, The Yin and Yang of YY1 in the nervous system, 10.1111/j.1471-4159.2008.05486.x
  40. Bento-Abreu André, Tabernero Arantxa, Medina José M., Peroxisome proliferator-activated receptor-alpha is required for the neurotrophic effect of oleic acid in neurons, 10.1111/j.1471-4159.2007.04807.x
  41. Dick T., Yang X. H., Yeo S. L., Chia W., Two closely linked Drosophila POU domain genes are expressed in neuroblasts and sensory elements., 10.1073/pnas.88.17.7645
  42. Ossovskaya Valeria S., Dolganov Gregory, Basbaum Allan I., Loss of function genetic screens reveal MTGR1 as an intracellular repressor of β1 integrin-dependent neurite outgrowth, 10.1016/j.jneumeth.2008.10.031
  43. Cameron S, Development, 129, 1763 (2002)
  44. van Noesel Max M, Neuroblastoma stage 4S: a multifocal stem-cell disease of the developing neural crest, 10.1016/s1470-2045(12)70012-8
  45. Diering G. H., Numata Y., Fan S., Church J., Numata M., Endosomal acidification by Na+/H+ exchanger NHE5 regulates TrkA cell-surface targeting and NGF-induced PI3K signaling, 10.1091/mbc.e12-06-0445
  46. Decock Anneleen, Ongenaert Maté, Hoebeeck Jasmien, De Preter Katleen, Van Peer Gert, Van Criekinge Wim, Ladenstein Ruth, Schulte Johannes H, Noguera Rosa, Stallings Raymond L, Van Damme An, Laureys Geneviève, Vermeulen Joëlle, Van Maerken Tom, Speleman Frank, Vandesompele Jo, Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers, 10.1186/gb-2012-13-10-r95
  47. Anders Simon, Huber Wolfgang, Differential expression analysis for sequence count data, 10.1186/gb-2010-11-10-r106
  48. Xiao Yufei, Hsiao Tzu-Hung, Suresh Uthra, Chen Hung-I Harry, Wu Xiaowu, Wolf Steven E., Chen Yidong, A novel significance score for gene selection and ranking, 10.1093/bioinformatics/btr671
  49. Benjamini Y, J R Statist Soc B, 57, 289 (1995)
  50. Mootha Vamsi K, Lindgren Cecilia M, Eriksson Karl-Fredrik, Subramanian Aravind, Sihag Smita, Lehar Joseph, Puigserver Pere, Carlsson Emma, Ridderstråle Martin, Laurila Esa, Houstis Nicholas, Daly Mark J, Patterson Nick, Mesirov Jill P, Golub Todd R, Tamayo Pablo, Spiegelman Bruce, Lander Eric S, Hirschhorn Joel N, Altshuler David, Groop Leif C, PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes, 10.1038/ng1180
  51. Ritchie Matthew E., Phipson Belinda, Wu Di, Hu Yifang, Law Charity W., Shi Wei, Smyth Gordon K., limma powers differential expression analyses for RNA-sequencing and microarray studies, 10.1093/nar/gkv007