User menu

Habitat-driven variation in mycorrhizal communities in the terrestrial orchid genus Dactylorhiza

Bibliographic reference Jacquemyn, Hans ; Waud, Michael ; Merckx, Vincent S. F. T. ; Brys, Rein ; Tyteca, Daniel ; et. al. Habitat-driven variation in mycorrhizal communities in the terrestrial orchid genus Dactylorhiza. In: Scientific Reports, Vol. 6, no.37182, p. 1-9 (2016)
Permanent URL http://hdl.handle.net/2078.1/178825
  1. Bernard, N. Recherches experimentales sur les orchidées. Revue Gén. Bot. 16, 405–451 (1904).
  2. Burgeff, H. Samenkeimung der Orchideen (Gustaf Fisher, Jena, 1936).
  3. McCormick Melissa K., Jacquemyn Hans, What constrains the distribution of orchid populations?, 10.1111/nph.12639
  4. Jacquemyn Hans, Brys Rein, Vandepitte Katrien, Honnay Olivier, Roldán-Ruiz Isabel, Wiegand Thorsten, A spatially explicit analysis of seedling recruitment in the terrestrial orchid Orchis purpurea, 10.1111/j.1469-8137.2007.02179.x
  5. Waud Michael, Wiegand Thorsten, Brys Rein, Lievens Bart, Jacquemyn Hans, Nonrandom seedling establishment corresponds with distance-dependent decline in mycorrhizal abundance in two terrestrial orchids, 10.1111/nph.13894
  6. Jacquemyn Hans, Brys Rein, Merckx Vincent S. F. T., Waud Michael, Lievens Bart, Wiegand Thorsten, Coexisting orchid species have distinct mycorrhizal communities and display strong spatial segregation, 10.1111/nph.12640
  7. Peay Kabir G., Bidartondo Martin I., Elizabeth Arnold A., Not every fungus is everywhere: scaling to the biogeography of fungal-plant interactions across roots, shoots and ecosystems : Letters, 10.1111/j.1469-8137.2009.03158.x
  8. Norros Veera, Penttilä Reijo, Suominen Mai, Ovaskainen Otso, Dispersal may limit the occurrence of specialist wood decay fungi already at small spatial scales, 10.1111/j.1600-0706.2012.20052.x
  9. Toljander Jonas F., Eberhardt Ursula, Toljander Ylva K., Paul Leslie R., Taylor Andy F. S., Species composition of an ectomycorrhizal fungal community along a local nutrient gradient in a boreal forest, 10.1111/j.1469-8137.2006.01718.x
  10. Peay Kabir G., Russo Sabrina E., McGuire Krista L., Lim Zhenyu, Chan Ju Ping, Tan Sylvester, Davies Stuart J., Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient, 10.1111/ele.12459
  11. Waud Michael, Busschaert Pieter, Lievens Bart, Jacquemyn Hans, Specificity and localised distribution of mycorrhizal fungi in the soil may contribute to co-existence of orchid species, 10.1016/j.funeco.2015.12.008
  12. Pandey Madhav, Sharma Jyotsna, Taylor Donald. Lee, Yadon Vern L., A narrowly endemic photosynthetic orchid is non-specific in its mycorrhizal associations, 10.1111/mec.12249
  13. Jacquemyn Hans, Waud Michael, Merckx Vincent S. F. T., Lievens Bart, Brys Rein, Mycorrhizal diversity, seed germination and long-term changes in population size across nine populations of the terrestrial orchidNeottia ovata, 10.1111/mec.13236
  14. Oja Jane, Kohout Petr, Tedersoo Leho, Kull Tiiu, Kõljalg Urmas, Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing, 10.1111/nph.13223
  15. Jacquemyn Hans, Waud Michael, Lievens Bart, Brys Rein, Differences in mycorrhizal communities betweenEpipactis palustris,E. helleborineand its presumed sister speciesE. neerlandica, 10.1093/aob/mcw015
  16. Delforge, P. Orchids of Europe, North Africa and the Middle East (A&C Black, London, 2006).
  17. Devos Nicolas, Raspé Olivier, Oh Sang-Hun, Tyteca Daniel, Jacquemart Anne-Laure, The evolution of Dactylorhiza (Orchidaceae) allotetraploid complex: Insights from nrDNA sequences and cpDNA PCR-RFLP data, 10.1016/j.ympev.2005.11.013
  18. Pillon Yohan, Fay Michael F., Hedrén Mikael, Bateman Richard M., Devey Dion S., Shipunov Alexey B., van der Bank Michelle, Chase Mark W., Evolution and Temporal Diversification of Western European Polyploid Species Complexes in Dactylorhiza (Orchidaceae), 10.2307/25065911
  19. Rasmussen Hanne N., Terrestrial orchids : From seed to mycotrophic plant, ISBN:9780511525452, 10.1017/cbo9780511525452
  20. kristiansen K. A., taylor D. L., kjøller R., rasmussen H. N., rosendahl S., Identification of mycorrhizal fungi from single pelotons ofDactylorhiza majalis(Orchidaceae) using single-strand conformation polymorphism and mitochondrial ribosomal large subunit DNA sequences : a new method to identify orchid mycorrhiza, 10.1046/j.0962-1083.2001.01324.x
  21. Bailarote B. C., Lievens B., Jacquemyn H., Does mycorrhizal specificity affect orchid decline and rarity?, 10.3732/ajb.1200117
  22. Jacquemyn Hans, Deja Agnieszka, De hert Koen, Cachapa Bailarote Bruno, Lievens Bart, Variation in Mycorrhizal Associations with Tulasnelloid Fungi among Populations of Five Dactylorhiza Species, 10.1371/journal.pone.0042212
  23. Shefferson R. P., Kull T., Tali K., Mycorrhizal interactions of orchids colonizing Estonian mine tailings hills, 10.3732/ajb.95.2.156
  24. Averyanov, L. V. In Orchid Biology: Reviews and Perspectives, vol. V. (ed. Arditti, J. ) Ch. 5, 159–206 (Timber Press, 1990).
  25. Hedrén M., Systematics of the Dactylorhiza euxina/incarnata/maculata polyploid complex (Orchidaceae) in Turkey: evidence from allozyme data, 10.1007/s006060170016
  26. Těšitelová Tamara, Jersáková Jana, Roy Mélanie, Kubátová Barbora, Těšitel Jakub, Urfus Tomáš, Trávníček Pavel, Suda Jan, Ploidy-specific symbiotic interactions: divergence of mycorrhizal fungi between cytotypes of theGymnadenia conopseagroup (Orchidaceae), 10.1111/nph.12348
  27. Girlanda M., Segreto R., Cafasso D., Liebel H. T., Rodda M., Ercole E., Cozzolino S., Gebauer G., Perotto S., Photosynthetic Mediterranean meadow orchids feature partial mycoheterotrophy and specific mycorrhizal associations, 10.3732/ajb.1000486
  28. Selosse Marc-André, Setaro Sabrina, Glatard Florent, Richard Franck, Urcelay Carlos, Weiß Michael, Sebacinales are common mycorrhizal associates of Ericaceae, 10.1111/j.1469-8137.2007.02064.x
  29. Weiß Michael, Sýkorová Zuzana, Garnica Sigisfredo, Riess Kai, Martos Florent, Krause Cornelia, Oberwinkler Franz, Bauer Robert, Redecker Dirk, Sebacinales Everywhere: Previously Overlooked Ubiquitous Fungal Endophytes, 10.1371/journal.pone.0016793
  30. van der Heijden Marcel G. A., Martin Francis M., Selosse Marc-André, Sanders Ian R., Mycorrhizal ecology and evolution: the past, the present, and the future, 10.1111/nph.13288
  31. JACQUEMYN HANS, HONNAY OLIVIER, CAMMUE BRUNO P. A., BRYS REIN, LIEVENS BART, Low specificity and nested subset structure characterize mycorrhizal associations in five closely related species of the genus Orchis : ORCHID MYCORRHIZAL ASSOCIATIONS, 10.1111/j.1365-294x.2010.04785.x
  32. Jacquemyn Hans, Merckx Vincent, Brys Rein, Tyteca Daniel, Cammue Bruno P. A., Honnay Olivier, Lievens Bart, Analysis of network architecture reveals phylogenetic constraints on mycorrhizal specificity in the genus Orchis (Orchidaceae), 10.1111/j.1469-8137.2011.03796.x
  33. Těšitelová Tamara, Kotilínek Milan, Jersáková Jana, Joly François-Xavier, Košnar Jiří, Tatarenko Irina, Selosse Marc-André, Two widespread greenNeottiaspecies (Orchidaceae) show mycorrhizal preference for Sebacinales in various habitats and ontogenetic stages, 10.1111/mec.13088
  34. McCormick Melissa K., Whigham Dennis F., O'Neill John P., Becker Janie J., Werner Sarah, Rasmussen Hanne N., Bruns Thomas D., Taylor D. Lee, Abundance and distribution of Corallorhiza odontorhiza reflect variations in climate and ectomycorrhizae, 10.1890/08-0729.1
  35. Bidartondo, M. I. & Read, D. J. Fungal specificity bottlenecks during orchid germination and development. Mol. Ecol. 17, 3707–3716 (2008).
  36. Jacquemyn Hans, Brys Rein, Waud Michael, Busschaert Pieter, Lievens Bart, Mycorrhizal networks and coexistence in species-rich orchid communities, 10.1111/nph.13281
  37. Van Laere Katrijn, França Soraya C., Vansteenkiste Hein, Van Huylenbroeck Johan, Steppe Kathy, Van Labeke Marie-Christine, Influence of ploidy level on morphology, growth and drought susceptibility in Spathiphyllum wallisii, 10.1007/s11738-010-0643-2
  38. Dijk Eeuwe, Willems Jo H., Van Andel Jelte, Nutrient responses as a key factor to the ecology of orchid species, 10.1111/plb.1997.46.4.339
  39. Hedren Mikael, Fay Michael F., Chase Mark W., Amplified Fragment Length Polymorphisms (AFLP) Reveal Details of Polyploid Evolution in Dactylorhiza (Orchidaceae), 10.2307/3558363
  40. Devos N., Tyteca D., Rasp� O., Wesselingh R. A., Jacquemart A.-L., Patterns of chloroplast diversity among western European Dactylorhiza species (Orchidaceae), 10.1007/s00606-003-0068-0
  41. Devos Nicolas, Oh Sang-Hun, Raspé Olivier, Jacquemart Anne-Laure, Manos Paul S., Nuclear ribosomal DNA sequence variation and evolution of spotted marsh-orchids (Dactylorhiza maculata group), 10.1016/j.ympev.2005.04.014
  42. Hedren M., Plastid DNA variation in the Dactylorhiza incarnata/maculata polyploid complex and the origin of allotetraploid D. sphagnicola (Orchidaceae), 10.1046/j.1365-294x.2003.01930.x
  43. Hedrén Mikael, Plastid DNA haplotype variation inDactylorhiza incarnata(Orchidaceae): evidence for multiple independent colonization events into Scandinavia, 10.1111/j.1756-1051.2009.00274.x
  44. PEDERSEN HENRIK Æ., Systematics and evolution of the Dactylorhiza romana/sambucina polyploid complex (Orchidaceae), 10.1111/j.1095-8339.2006.00573.x
  45. DEVOS NICOLAS, RASPÉ OLIVIER, JACQUEMART ANNE–LAURE, TYTECA DANIEL, On the monophyly of Dactylorhiza Necker ex Nevski (Orchidaceae): is Coeloglossum viride (L.) Hartman a Dactylorhiza?, 10.1111/j.1095-8339.2006.00561.x
  46. Taylor D. Lee, McCormick Melissa K., Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas, 10.1111/j.1469-8137.2007.02320.x
  47. Lindahl Björn D., Nilsson R. Henrik, Tedersoo Leho, Abarenkov Kessy, Carlsen Tor, Kjøller Rasmus, Kõljalg Urmas, Pennanen Taina, Rosendahl Søren, Stenlid Jan, Kauserud Håvard, Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide, 10.1111/nph.12243
  48. Martin Marcel, Cutadapt removes adapter sequences from high-throughput sequencing reads, 10.14806/ej.17.1.200
  49. Edgar Robert C., Haas Brian J., Clemente Jose C., Quince Christopher, Knight Rob, UCHIME improves sensitivity and speed of chimera detection, 10.1093/bioinformatics/btr381
  50. Edgar Robert C, UPARSE: highly accurate OTU sequences from microbial amplicon reads, 10.1038/nmeth.2604
  51. Ihrmark Katarina, Bödeker Inga T.M., Cruz-Martinez Karelyn, Friberg Hanna, Kubartova Ariana, Schenck Jessica, Strid Ylva, Stenlid Jan, Brandström-Durling Mikael, Clemmensen Karina E., Lindahl Björn D., New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities, 10.1111/j.1574-6941.2012.01437.x
  52. Altschul Stephen F., Gish Warren, Miller Webb, Myers Eugene W., Lipman David J., Basic local alignment search tool, 10.1016/s0022-2836(05)80360-2
  53. Benson D. A., Karsch-Mizrachi I., Lipman D. J., Ostell J., Wheeler D. L., GenBank, 10.1093/nar/gkm929
  54. Dearnaley, J. W. D., Martos, F. & Selosse, M. A. In Fungal Associations 2nd edn (ed. Hock, B. ) Ch. 12, 207–230 (Springer-Verlag, 2012).
  55. Katoh K., MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform, 10.1093/nar/gkf436
  56. Darriba Diego, Taboada Guillermo L, Doallo Ramón, Posada David, jModelTest 2: more models, new heuristics and parallel computing, 10.1038/nmeth.2109
  57. Stamatakis Alexandros, RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, 10.1093/bioinformatics/btu033
  58. Oksanen, J. et al. Vegan: Community Ecology Package. R package version 2.3-1 (2015).
  59. Guimerà Roger, Nunes Amaral Luís A., Functional cartography of complex metabolic networks, 10.1038/nature03288
  60. De Cáceres Miquel, Legendre Pierre, Moretti Marco, Improving indicator species analysis by combining groups of sites, 10.1111/j.1600-0706.2010.18334.x