User menu

Fast multipurpose Monte Carlo simulation for proton therapy using multi- and many-core CPU architectures

Bibliographic reference Souris, Kevin ; Lee, John Aldo ; Sterpin, Edmond. Fast multipurpose Monte Carlo simulation for proton therapy using multi- and many-core CPU architectures. In: Medical Physics, Vol. 43, no.4, p. 1700-1712 (2016)
Permanent URL http://hdl.handle.net/2078.1/178802
  1. Paganetti Harald, Range uncertainties in proton therapy and the role of Monte Carlo simulations, 10.1088/0031-9155/57/11/r99
  2. Jabbari Keyvan, Seuntjens Jan, A fast Monte Carlo code for proton transport in radiation therapy based on MCNPX, 10.4103/0971-6203.139004
  3. Jia Xun, Ziegenhein Peter, Jiang Steve B, GPU-based high-performance computing for radiation therapy, 10.1088/0031-9155/59/4/r151
  4. Pratx Guillem, Xing Lei, GPU computing in medical physics: A review : GPU computing in medical physics, 10.1118/1.3578605
  5. Jia Xun, Schümann Jan, Paganetti Harald, Jiang Steve B, GPU-based fast Monte Carlo dose calculation for proton therapy, 10.1088/0031-9155/57/23/7783
  6. Yepes Pablo P, Mirkovic Dragan, Taddei Phillip J, A GPU implementation of a track-repeating algorithm for proton radiotherapy dose calculations, 10.1088/0031-9155/55/23/s11
  7. Kohno R, Hotta K, Nishioka S, Matsubara K, Tansho R, Suzuki T, Clinical implementation of a GPU-based simplified Monte Carlo method for a treatment planning system of proton beam therapy, 10.1088/0031-9155/56/22/n03
  8. Ziegenhein Peter, Pirner Sven, Ph Kamerling Cornelis, Oelfke Uwe, Fast CPU-based Monte Carlo simulation for radiotherapy dose calculation, 10.1088/0031-9155/60/15/6097
  9. J. Jeffers J. Reinders Intel Xeon Phi coprocessor high performance programming Newnes
  10. K. W. Schulz R. Ulerich N. Malaya P. T. Bauman R. Stogner C. Simmons Early experiences porting scientific applications to the many integrated core (MIC) platform TACC-Intel Highly Parallel Computing Symposium Austin, Texas IEEE 2012
  11. Wang Endong, Zhang Qing, Shen Bo, Zhang Guangyong, Lu Xiaowei, Wu Qing, Wang Yajuan, High-Performance Computing on the Intel® Xeon Phi™, ISBN:9783319064857, 10.1007/978-3-319-06486-4
  12. R. Ranman Intel Xeon Phi coprocessor architecture and tools
  13. Fippel Matthias, Soukup Martin, A Monte Carlo dose calculation algorithm for proton therapy, 10.1118/1.1769631
  14. Verburg Joost M, Shih Helen A, Seco Joao, Simulation of prompt gamma-ray emission during proton radiotherapy, 10.1088/0031-9155/57/17/5459
  15. Smeets J, Roellinghoff F, Prieels D, Stichelbaut F, Benilov A, Busca P, Fiorini C, Peloso R, Basilavecchia M, Frizzi T, Dehaes J C, Dubus A, Prompt gamma imaging with a slit camera for real-time range control in proton therapy, 10.1088/0031-9155/57/11/3371
  16. Sterpin E, Janssens G, Smeets J, Stappen François Vander, Prieels D, Priegnitz Marlen, Perali Irene, Vynckier S, Analytical computation of prompt gamma ray emission and detection for proton range verification, 10.1088/0031-9155/60/12/4915
  17. Jan S, Santin G, Strul D, Staelens S, Assié K, Autret D, Avner S, Barbier R, Bardiès M, Bloomfield P M, Brasse D, Breton V, Bruyndonckx P, Buvat I, Chatziioannou A F, Choi Y, Chung Y H, Comtat C, Donnarieix D, Ferrer L, Glick S J, Groiselle C J, Guez D, Honore P-F, Kerhoas-Cavata S, Kirov A S, Kohli V, Koole M, Krieguer M, Laan D J van der, Lamare F, Largeron G, Lartizien C, Lazaro D, Maas M C, Maigne L, Mayet F, Melot F, Merheb C, Pennacchio E, Perez J, Pietrzyk U, Rannou F R, Rey M, Schaart D R, Schmidtlein C R, Simon L, Song T Y, Vieira J-M, Visvikis D, Walle R Van de, Wieërs E, Morel C, GATE: a simulation toolkit for PET and SPECT, 10.1088/0031-9155/49/19/007
  18. Jan S, Benoit D, Becheva E, Carlier T, Cassol F, Descourt P, Frisson T, Grevillot L, Guigues L, Maigne L, Morel C, Perrot Y, Rehfeld N, Sarrut D, Schaart D R, Stute S, Pietrzyk U, Visvikis D, Zahra N, Buvat I, GATE V6: a major enhancement of the GATE simulation platform enabling modelling of CT and radiotherapy, 10.1088/0031-9155/56/4/001
  19. Agostinelli S., Allison J., Amako K., Apostolakis J., Araujo H., Arce P., Asai M., Axen D., Banerjee S., Barrand G., Behner F., Bellagamba L., Boudreau J., Broglia L., Brunengo A., Burkhardt H., Chauvie S., Chuma J., Chytracek R., Cooperman G., Cosmo G., Degtyarenko P., Dell'Acqua A., Depaola G., Dietrich D., Enami R., Feliciello A., Ferguson C., Fesefeldt H., Folger G., Foppiano F., Forti A., Garelli S., Giani S., Giannitrapani R., Gibin D., Gómez Cadenas J.J., González I., Gracia Abril G., Greeniaus G., Greiner W., Grichine V., Grossheim A., Guatelli S., Gumplinger P., Hamatsu R., Hashimoto K., Hasui H., Heikkinen A., Howard A., Ivanchenko V., Johnson A., Jones F.W., Kallenbach J., Kanaya N., Kawabata M., Kawabata Y., Kawaguti M., Kelner S., Kent P., Kimura A., Kodama T., Kokoulin R., Kossov M., Kurashige H., Lamanna E., Lampén T., Lara V., Lefebure V., Lei F., Liendl M., Lockman W., Longo F., Magni S., Maire M., Medernach E., Minamimoto K., Mora de Freitas P., Morita Y., Murakami K., Nagamatu M., Nartallo R., Nieminen P., Nishimura T., Ohtsubo K., Okamura M., O'Neale S., Oohata Y., Paech K., Perl J., Pfeiffer A., Pia M.G., Ranjard F., Rybin A., Sadilov S., Di Salvo E., Santin G., Sasaki T., Savvas N., Sawada Y., Scherer S., Sei S., Sirotenko V., Smith D., Starkov N., Stoecker H., Sulkimo J., Takahata M., Tanaka S., Tcherniaev E., Safai Tehrani E., Tropeano M., Truscott P., Uno H., Urban L., Urban P., Verderi M., Walkden A., Wander W., Weber H., Wellisch J.P., Wenaus T., Williams D.C., Wright D., Yamada T., Yoshida H., Zschiesche D., Geant4—a simulation toolkit, 10.1016/s0168-9002(03)01368-8
  20. Salvat, Workshop Proceedings (2011)
  21. geant4 Collaboration et al. geant4physics reference manual http://geant4.web.cern.ch/geant4/UserDocumentation/UsersGuides/PhysicsReferenceManual/fo/PhysicsReferenceManual.pdf
  22. Schneider Uwe, Pedroni Eros, Lomax Antony, The calibration of CT Hounsfield units for radiotherapy treatment planning, 10.1088/0031-9155/41/1/009
  23. Leo, Techniques for Nuclear and Particle Physics Experiments: A How-to Approach (2012)
  24. Kawrakow I., Accurate condensed history Monte Carlo simulation of electron transport. I.EGSnrc, the newEGS4version, 10.1118/1.598917
  25. Bohr, The Penetration of Atomic Particles through Matter, 18 (1948)
  26. International Commission on Radiation Units and Measurements, ICRU Report 49 (1993)
  27. Rossi Bruno, Greisen Kenneth, Cosmic-Ray Theory, 10.1103/revmodphys.13.240
  28. ICRU, ICRU Report 44 (1989)
  29. ICRU, ICRU Report 63 (2000)
  30. Sterpin E., Sorriaux J., Vynckier S., Extension of PENELOPE to protons: Simulation of nuclear reactions and benchmark with Geant4 : PENH: An extension of PENELOPE to protons, 10.1118/1.4823469
  31. Cross Sections Evaluation Working Group 2009 Endf-6 formats manual
  32. Paganetti H, Nuclear interactions in proton therapy: dose and relative biological effect distributions originating from primary and secondary particles, 10.1088/0031-9155/47/5/305
  33. Arndt Richard A., Strakovsky Igor I., Workman Ron L., Nucleon-nucleon elastic scattering to 3 GeV, 10.1103/physrevc.62.034005
  34. Reinders, High Performance Parallelism Pearls: Multicore and Many-Core Programming Approaches (2014)
  35. Sanchez Luis Miguel, Fernandez Javier, Sotomayor Rafael, Escolar Soledad, Garcia J. Daniel., A Comparative Study and Evaluation of Parallel Programming Models for Shared-Memory Parallel Architectures, 10.1007/s00354-013-0301-5
  36. OpenMP Architecture Review Board OpenMP application program interface
  37. Cramer, OpenMP programming on intel Xeon Phi coprocessors: An early performance comparison, 38 (2012)
  38. Perl J., Shin J., Schümann J., Faddegon B., Paganetti H., TOPAS: An innovative proton Monte Carlo platform for research and clinical applications : TOPAS: An innovative proton Monte Carlo platform, 10.1118/1.4758060
  39. Sarrut David, Bardiès Manuel, Boussion Nicolas, Freud Nicolas, Jan Sébastien, Létang Jean-Michel, Loudos George, Maigne Lydia, Marcatili Sara, Mauxion Thibault, Papadimitroulas Panagiotis, Perrot Yann, Pietrzyk Uwe, Robert Charlotte, Schaart Dennis R., Visvikis Dimitris, Buvat Irène, A review of the use and potential of the GATE Monte Carlo simulation code for radiation therapy and dosimetry applications : GATE for dosimetry, 10.1118/1.4871617
  40. Grevillot Loïc, Frisson Thibault, Zahra Nabil, Bertrand Damien, Stichelbaut Frédéric, Freud Nicolas, Sarrut David, Optimization of GEANT4 settings for Proton Pencil Beam Scanning simulations using GATE, 10.1016/j.nimb.2010.07.011
  41. Brun Rene, Rademakers Fons, ROOT — An object oriented data analysis framework, 10.1016/s0168-9002(97)00048-x
  42. Sterpin Edmond, Sorriaux Jefferson, Souris Kevin, Vynckier Stefaan, Bouchard Hugo, A Fano cavity test for Monte Carlo proton transport algorithms : Fano cavity test for MC simulations of protons, 10.1118/1.4835475
  43. S. Anthony Intel unveils 72-core x86 knights landing CPU for exascale supercomputing http://www.extremetech.com/extreme/171678-intel-unveils-72-core-x86-knights-landing-cpu-for-exascale-supercomputing
  44. D. Kantor Knights landing details http://www.realworldtech.com/knights-landing-details/