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Variation in genomic islands contribute to genome plasticity in cupriavidus metallidurans

Bibliographic reference Van Houdt, Rob ; Monsieurs, Pieter ; Mijnendonckx, Kristel ; Provoost, Ann ; Janssen, Ann ; et. al. Variation in genomic islands contribute to genome plasticity in cupriavidus metallidurans. In: BMC Genomics, Vol. 13, no. 1 (2012)
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  1. Silver Simon, Phung Le T., A bacterial view of the periodic table: genes and proteins for toxic inorganic ions, 10.1007/s10295-005-0019-6
  2. Goris J., De Vos P., Coenye T., Hoste B., Janssens D., Brim H., Diels L., Mergeay M., Kersters K., Vandamme P., Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend, 10.1099/00207713-51-5-1773
  3. Mergeay Max, Monchy Sébastien, Vallaeys Tatiana, Auquier Vanessa, Benotmane Abderrafi, Bertin Philippe, Taghavi Safiyh, Dunn John, van der Lelie Daniel, Wattiez Ruddy, Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: towards a catalogue of metal-responsive genes, 10.1016/s0168-6445(03)00045-7
  4. Monchy S., Benotmane M. A., Janssen P., Vallaeys T., Taghavi S., van der Lelie D., Mergeay M., Plasmids pMOL28 and pMOL30 of Cupriavidus metallidurans Are Specialized in the Maximal Viable Response to Heavy Metals, 10.1128/jb.00375-07
  5. Monsieurs Pieter, Moors Hugo, Van Houdt Rob, Janssen Paul J., Janssen Ann, Coninx Ilse, Mergeay Max, Leys Natalie, Heavy metal resistance in Cupriavidus metallidurans CH34 is governed by an intricate transcriptional network, 10.1007/s10534-011-9473-y
  6. Janssen Paul J., Van Houdt Rob, Moors Hugo, Monsieurs Pieter, Morin Nicolas, Michaux Arlette, Benotmane Mohammed A., Leys Natalie, Vallaeys Tatiana, Lapidus Alla, Monchy Sébastien, Médigue Claudine, Taghavi Safiyh, McCorkle Sean, Dunn John, van der Lelie Daniël, Mergeay Max, The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments, 10.1371/journal.pone.0010433
  7. Van Houdt Rob, Monchy Sébastien, Leys Natalie, Mergeay Max, New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria, 10.1007/s10482-009-9345-4
  8. Mijnendonckx Kristel, Provoost Ann, Monsieurs Pieter, Leys Natalie, Mergeay Max, Mahillon Jacques, Van Houdt Rob, Insertion sequence elements in Cupriavidus metallidurans CH34: Distribution and role in adaptation, 10.1016/j.plasmid.2010.12.006
  9. Ryan Michael P, Pembroke J Tony, Adley Catherine C, Novel Tn4371-ICE like element in Ralstonia pickettii and Genome mining for comparative elements, 10.1186/1471-2180-9-242
  10. Toussaint A., Merlin C., Monchy S., Benotmane M. A., Leplae R., Mergeay M., Springael D., The Biphenyl- and 4-Chlorobiphenyl-Catabolic Transposon Tn4371, a Member of a New Family of Genomic Islands Related to IncP and Ti Plasmids, 10.1128/aem.69.8.4837-4845.2003
  11. Brim Hassan, Heyndrickx Marc, de Vos Paul, Wilmotte Annick, Springael Dirk, Schlegel Hans G., Mergeay Max, Amplified rDNA Restriction Analysis and Further Genotypic Characterisation of Metal-Resistant Soil Bacteria and Related Facultative Hydrogenotrophs, 10.1016/s0723-2020(99)80073-3
  12. La Duc Myron T., Nicholson Wayne, Kern Roger, Venkateswaran Kasthuri, Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility, 10.1046/j.1462-2920.2003.00496.x
  13. La Duc M. T., Kern R., Venkateswaran K., Microbial Monitoring of Spacecraft and Associated Environments, 10.1007/s00248-003-1012-0
  14. Ott C. M., Bruce R. J., Pierson D. L., Microbial Characterization of Free Floating Condensate aboard the Mir Space Station, 10.1007/s00248-003-1038-3
  15. Coenye T., Spilker T., Reik R., Vandamme P., LiPuma J. J., Use of PCR Analyses To Define the Distribution of Ralstonia Species Recovered from Patients with Cystic Fibrosis, 10.1128/jcm.43.7.3463-3466.2005
  16. Langevin S., Vincelette J., Bekal S., Gaudreau C., First Case of Invasive Human Infection Caused by Cupriavidus metallidurans, 10.1128/jcm.01947-10
  17. Klockgether J., Wurdemann D., Reva O., Wiehlmann L., Tummler B., Diversity of the Abundant pKLC102/PAGI-2 Family of Genomic Islands in Pseudomonas aeruginosa, 10.1128/jb.01688-06
  18. Kill K., Genome update: sigma factors in 240 bacterial genomes, 10.1099/mic.0.28339-0
  19. Monchy S., Transcriptomic and proteomic analyses of the pMOL30-encoded copper resistance in Cupriavidus metallidurans strain CH34, 10.1099/mic.0.28593-0
  20. Scherer Judith, Nies Dietrich H., CzcP is a novel efflux system contributing to transition metal resistance inCupriavidus metalliduransCH34, 10.1111/j.1365-2958.2009.06792.x
  21. Golding Brian, Bavishi Anish, Abhishek Ankur, Lin Lin, Choudhary Madhusudan, Complex prokaryotic genome structure: rapid evolution of chromosome II, 10.1139/g10-046
  22. Sato Y., Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines, 10.1099/ijs.0.63922-0
  23. Wachtershauser G., From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya, 10.1098/rstb.2006.1904
  24. Parks A. R., Peters J. E., Transposon Tn7 Is Widespread in Diverse Bacteria and Forms Genomic Islands, 10.1128/jb.01536-06
  25. Parks Adam R., Peters Joseph E., Tn7 elements: Engendering diversity from chromosomes to episomes, 10.1016/j.plasmid.2008.09.008
  26. Grosse Cornelia, Friedrich Susann, Nies Dietrich H., Contribution of Extracytoplasmic Function Sigma Factors to Transition Metal Homeostasis in Cupriavidus metallidurans Strain CH34, 10.1159/000099644
  27. Silver Simon, Phung Le T., BACTERIAL HEAVY METAL RESISTANCE: New Surprises, 10.1146/annurev.micro.50.1.753
  28. Baker-Austin Craig, Wright Meredith S., Stepanauskas Ramunas, McArthur J.V., Co-selection of antibiotic and metal resistance, 10.1016/j.tim.2006.02.006
  29. Konopka A, Zakharova T, Quantification of bacterial lead resistance via activity assays, 10.1016/s0167-7012(99)00032-9
  30. Andrup Lars, Barfod Kenneth Klingenberg, Jensen Gert B., Smidt Lasse, Detection of large plasmids from the Bacillus cereus group, 10.1016/j.plasmid.2007.11.005
  31. Ritchie M. E., Silver J., Oshlack A., Holmes M., Diyagama D., Holloway A., Smyth G. K., A comparison of background correction methods for two-colour microarrays, 10.1093/bioinformatics/btm412
  32. Smyth Gordon K, Speed Terry, Normalization of cDNA microarray data, 10.1016/s1046-2023(03)00155-5
  33. Suzuki R., Shimodaira H., Pvclust: an R package for assessing the uncertainty in hierarchical clustering, 10.1093/bioinformatics/btl117
  34. Vallenet D., MaGe: a microbial genome annotation system supported by synteny results, 10.1093/nar/gkj406