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Unraveling the hydrodynamics of split root water uptake experiments using CT scanned root architectures and three dimensional flow simulations

Bibliographic reference Koebernick, Nicolai ; Huber, Katrin ; Kerkhofs, Elien ; Vanderborght, Jan ; Javaux, Mathieu ; et. al. Unraveling the hydrodynamics of split root water uptake experiments using CT scanned root architectures and three dimensional flow simulations. In: Frontiers in Plant Science, Vol. 6, no.370 (29 May 2015)
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  1. Ackermann J., Vetterlein D., Tanneberg H., Neue H.-U., Mattusch J., Jahn R., Speciation of Arsenic under Dynamic Conditions, 10.1002/elsc.200800012
  2. Améglio Thierry, 10.1023/a:1026415302759
  3. Bao Y., Aggarwal P., Robbins N. E., Sturrock C. J., Thompson M. C., Tan H. Q., Tham C., Duan L., Rodriguez P. L., Vernoux T., Mooney S. J., Bennett M. J., Dinneny J. R., Plant roots use a patterning mechanism to position lateral root branches toward available water, 10.1073/pnas.1400966111
  4. Bramley H., Turner N. C., Turner D. W., Tyerman S. D., Roles of Morphology, Anatomy, and Aquaporins in Determining Contrasting Hydraulic Behavior of Roots, 10.1104/pp.108.134098
  5. Clausnitzer V., Hopmans J. W., Simultaneous modeling of transient three-dimensional root growth and soil water flow, 10.1007/bf00010082
  6. Couvreur V., Vanderborght J., Draye X., Javaux M., Dynamic aspects of soil water availability for isohydric plants: Focus on root hydraulic resistances, 10.1002/2014wr015608
  7. Couvreur V., Vanderborght J., Javaux M., A simple three-dimensional macroscopic root water uptake model based on the hydraulic architecture approach, 10.5194/hess-16-2957-2012
  8. Donovan Lisa A., Richards James H., Linton Matthew J., MAGNITUDE AND MECHANISMS OF DISEQUILIBRIUM BETWEEN PREDAWN PLANT AND SOIL WATER POTENTIALS, 10.1890/0012-9658(2003)084[0463:mamodb];2
  9. DOUSSAN C, Modelling of the Hydraulic Architecture of Root Systems: An Integrated Approach to Water Absorption—Model Description, 10.1006/anbo.1997.0540
  10. Doussan Claude, Pierret Alain, Garrigues Emmanuelle, Pagès Loïc, Water Uptake by Plant Roots: II – Modelling of Water Transfer in the Soil Root-system with Explicit Account of Flow within the Root System – Comparison with Experiments, 10.1007/s11104-004-7904-z
  11. Downie Helen, Holden Nicola, Otten Wilfred, Spiers Andrew J., Valentine Tracy A., Dupuy Lionel X., Transparent Soil for Imaging the Rhizosphere, 10.1371/journal.pone.0044276
  13. Durner Wolfgang, Hydraulic conductivity estimation for soils with heterogeneous pore structure, 10.1029/93wr02676
  14. Dutilleul Pierre, Lontoc-Roy Melinda, Prasher Shiv O., Branching out with a CT scanner, 10.1016/j.tplants.2005.06.004
  15. El Nadi, Neth. J. Agric. Sci, 17, 133 (1969)
  16. Flavel R. J., Guppy C. N., Tighe M., Watt M., McNeill A., Young I. M., Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography, 10.1093/jxb/err421
  17. Frensch J., Steudle E., Axial and Radial Hydraulic Resistance to Roots of Maize (Zea mays L.), 10.1104/pp.91.2.719
  18. Garrigues Emmanuelle, Doussan Claude, Pierret Alain, Water Uptake by Plant Roots: I – Formation and Propagation of a Water Extraction Front in Mature Root Systems as Evidenced by 2D Light Transmission Imaging, 10.1007/s11104-004-7903-0
  19. Gregory P. J., Hutchison D. J., Read D. B., Jenneson P. M., Gilboy W. B., Morton E. J., Non-invasive imaging of roots with high resolution X-ray micro-tomography, Roots: The Dynamic Interface between Plants and the Earth (2003) ISBN:9789048164073 p.351-359, 10.1007/978-94-017-2923-9_34
  20. Hainsworth J. M., Aylmore L. A. G., Water Extraction by Single Plant Roots1, 10.2136/sssaj1986.03615995005000040003x
  21. Han L., Dutilleul P., Prasher S. O., Beaulieu C., Smith D. L., Assessment of Common Scab-Inducing Pathogen Effects on Potato Underground Organs Via Computed Tomography Scanning, 10.1094/phyto-98-10-1118
  22. Herkelrath W. N., Miller E. E., Gardner W. R., Water Uptake by Plants: I. Divided Root Experiments1, 10.2136/sssaj1977.03615995004100060003x
  23. Hinckley Thomas M., Bruckerhoff David N., The effects of drought on water relations and stem shrinkage of Quercus alba, 10.1139/b75-009
  24. Huber Katrin, Vanderborght Jan, Javaux Mathieu, Schröder Natalie, Dodd Ian C., Vereecken Harry, Modelling the impact of heterogeneous rootzone water distribution on the regulation of transpiration by hormone transport and/or hydraulic pressures, 10.1007/s11104-014-2188-4
  25. Huck M. G., Klepper B., Taylor H. M., Diurnal Variations in Root Diameter, 10.1104/pp.45.4.529
  26. Javaux Mathieu, Couvreur Valentin, Vanderborght Jan, Vereecken Harry, Root Water Uptake: From Three-Dimensional Biophysical Processes to Macroscopic Modeling Approaches, 10.2136/vzj2013.02.0042
  27. Javaux Mathieu, Schröder Tom, Vanderborght Jan, Vereecken Harry, Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake, 10.2136/vzj2007.0115
  28. Jenneson, IEEE Nuclear Science Symposium Conference Record, 429 (1999)
  29. Kaestner Anders, Schneebeli Martin, Graf Frank, Visualizing three-dimensional root networks using computed tomography, 10.1016/j.geoderma.2006.04.009
  30. Koebernick Nicolai, Weller Ulrich, Huber Katrin, Schlüter Steffen, Vogel Hans-Jörg, Jahn Reinhold, Vereecken Harry, Vetterlein Doris, In Situ Visualization and Quantification of Three-Dimensional Root System Architecture and Growth Using X-Ray Computed Tomography, 10.2136/vzj2014.03.0024
  31. Leitner D., Felderer B., Vontobel P., Schnepf A., Recovering Root System Traits Using Image Analysis Exemplified by Two-Dimensional Neutron Radiography Images of Lupine, 10.1104/pp.113.227892
  32. Leitner Daniel, Klepsch Sabine, Bodner Gernot, Schnepf Andrea, A dynamic root system growth model based on L-Systems : Tropisms and coupling to nutrient uptake from soil, 10.1007/s11104-010-0284-7
  33. Lontoc-Roy Melinda, Dutilleul Pierre, Prasher Shiv O., Han Liwen, Brouillet Thomas, Smith Donald L., Advances in the acquisition and analysis of CT scan data to isolate a crop root system from the soil medium and quantify root system complexity in 3-D space, 10.1016/j.geoderma.2006.08.025
  34. Lontoc-Roy Melinda, Dutilleul Pierre, Prasher Shiv O., Han Liwen, Smith Donald L., Computed tomography scanning for three-dimensional imaging and complexity analysis of developing root systems, 10.1139/b05-118
  35. Lynch Jonathan P., Nielsen Kai L., Davis Robert D., Jablokow Andrei G., 10.1023/a:1004276724310
  36. Mooney S. J., Pridmore T. P., Helliwell J., Bennett M. J., Developing X-ray Computed Tomography to non-invasively image 3-D root systems architecture in soil, 10.1007/s11104-011-1039-9
  37. Neumann Rebecca B., Cardon Zoe G., The magnitude of hydraulic redistribution by plant roots: a review and synthesis of empirical and modeling studies : Tansley review, 10.1111/j.1469-8137.2012.04088.x
  38. Oswald Sascha E., Menon Manoj, Carminati Andrea, Vontobel Peter, Lehmann Eberhard, Schulin Rainer, Quantitative Imaging of Infiltration, Root Growth, and Root Water Uptake via Neutron Radiography, 10.2136/vzj2007.0156
  39. Pagès Loïc, Vercambre Gilles, Drouet Jean-Louis, Lecompte François, Collet Catherine, Le Bot Jacques, Root Typ: a generic model to depict and analyse the root system architecture, 10.1023/b:plso.0000016540.47134.03
  40. Peksen Erkut, Non-destructive leaf area estimation model for faba bean (Vicia faba L.), 10.1016/j.scienta.2007.04.003
  41. Peters A., Durner W., Simplified evaporation method for determining soil hydraulic properties, 10.1016/j.jhydrol.2008.04.016
  42. Pierret Alain, Kirby Mac, Moran Chris, Simultaneous X-ray imaging of plant root growth and water uptake in thin-slab systems, Roots: The Dynamic Interface between Plants and the Earth (2003) ISBN:9789048164073 p.361-373, 10.1007/978-94-017-2923-9_35
  43. Pohlmeier A., Oros-Peusquens A., Javaux M., Menzel M. I., Vanderborght J., Kaffanke J., Romanzetti S., Lindenmair J., Vereecken H., Shah N. J., Changes in Soil Water Content Resulting from Root Uptake Monitored by Magnetic Resonance Imaging, 10.2136/vzj2007.0110
  44. Pratt, Digital Image Processing (1991)
  46. R�mheld V., Marschner H., Genotypical differences among graminaceous species in release of phytosiderophores and uptake of iron phytosiderophores, 10.1007/bf00011260
  47. Rudin Leonid I., Osher Stanley, Fatemi Emad, Nonlinear total variation based noise removal algorithms, 10.1016/0167-2789(92)90242-f
  48. Schaap Marcel G., Leij Feike J., van Genuchten Martinus Th., rosetta : a computer program for estimating soil hydraulic parameters with hierarchical pedotransfer functions, 10.1016/s0022-1694(01)00466-8
  49. Scholander P. F., Bradstreet E. D., Hemmingsen E. A., Hammel H. T., Sap Pressure in Vascular Plants: Negative hydrostatic pressure can be measured in plants, 10.1126/science.148.3668.339
  50. Schröder Natalie, Lazarovitch Naftali, Vanderborght Jan, Vereecken Harry, Javaux Mathieu, Linking transpiration reduction to rhizosphere salinity using a 3D coupled soil-plant model, 10.1007/s11104-013-1990-8
  51. Simunek, The SWMS-3D Code for Simulating Water Flow and Solute Transport in Three-dimensional Variably-saturated Media (1995)
  52. Stingaciu Laura, Schulz Hannes, Pohlmeier Andreas, Behnke Sven, Zilken Herwig, Javaux Mathieu, Vereecken Harry, In Situ Root System Architecture Extraction from Magnetic Resonance Imaging for Water Uptake Modeling, 10.2136/vzj2012.0019
  54. Tracy Saoirse R., Black Colin R., Roberts Jeremy A., Sturrock Craig, Mairhofer Stefan, Craigon Jim, Mooney Sacha J., Quantifying the impact of soil compaction on root system architecture in tomato (Solanum lycopersicum) by X-ray micro-computed tomography, 10.1093/aob/mcs031
  55. van Genuchten M. Th., A Closed-form Equation for Predicting the Hydraulic Conductivity of Unsaturated Soils1, 10.2136/sssaj1980.03615995004400050002x
  56. Vetterlein Doris, Marschner Horst, Horn Rainer, Microtensiometer technique for in situ measurement of soil matric potential and root water extraction from a sandy soil, 10.1007/bf00016617
  57. Zappala Susan, Helliwell Jonathan R., Tracy Saoirse R., Mairhofer Stefan, Sturrock Craig J., Pridmore Tony, Bennett Malcolm, Mooney Sacha J., Effects of X-Ray Dose On Rhizosphere Studies Using X-Ray Computed Tomography, 10.1371/journal.pone.0067250
  58. Zarebanadkouki M., Kim Y.X., Moradi A.B., Vogel H.-J., Kaestner A., Carminati A., Quantification and Modeling of Local Root Water Uptake Using Neutron Radiography and Deuterated Water, 10.2136/vzj2011.0196
  59. Zimmermann Ulrich, Bitter Rebecca, Marchiori Paulo Eduardo Ribeiro, Rüger Simon, Ehrenberger Wilhelm, Sukhorukov Vladimir L., Schüttler Annika, Ribeiro Rafael Vasconcelos, A non-invasive plant-based probe for continuous monitoring of water stress in real time: a new tool for irrigation scheduling and deeper insight into drought and salinity stress physiology, 10.1590/s2197-00252013000100002
  60. Zwieniecki Maciej A., Thompson Matthew V., Holbrook N. Michele, Understanding the Hydraulics of Porous Pipes: Tradeoffs Between Water Uptake and Root Length Utilization, 10.1007/s00344-003-0008-9
  61. Vetterlein Doris, Szegedi Krisztian, Ackermann Juliane, Mattusch Jürgen, Neue Heinz-Ulrich, Tanneberg Hartmut, Jahn Reinhold, Competitive Mobilization of Phosphate and Arsenate Associated with Goethite by Root Activity, 10.2134/jeq2006.0369