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Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae

Bibliographic reference Streubel, Jana ; Pesce, Céline ; Hutin, Mathilde ; Koebnik, Ralf ; Boch, Jens ; et. al. Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae. In: New Phytologist, Vol. 200, no. 3, p. 808-819 (2013)
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  1. Antony G., Zhou J., Huang S., Li T., Liu B., White F., Yang B., Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3, 10.1105/tpc.110.078964
  2. Bairoch A., The Universal Protein Resource (UniProt), 10.1093/nar/gki070
  3. Frank Baker R., Leach Kristen A., Braun David M., SWEET as Sugar: New Sucrose Effluxers in Plants, 10.1093/mp/sss054
  4. Boch Jens, Bonas Ulla, XanthomonasAvrBs3 Family-Type III Effectors: Discovery and Function, 10.1146/annurev-phyto-080508-081936
  5. Boch J., Scholze H., Schornack S., Landgraf A., Hahn S., Kay S., Lahaye T., Nickstadt A., Bonas U., Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors, 10.1126/science.1178811
  6. Bogdanove A. J., Voytas D. F., TAL Effectors: Customizable Proteins for DNA Targeting, 10.1126/science.1204094
  7. Braun D. M., SWEET! The Pathway Is Complete, 10.1126/science.1216828
  8. Bultmann Sebastian, Morbitzer Robert, Schmidt Christine S., Thanisch Katharina, Spada Fabio, Elsaesser Janett, Lahaye Thomas, Leonhardt Heinrich, Targeted transcriptional activation of silent oct4 pluripotency gene by combining designer TALEs and inhibition of epigenetic modifiers, 10.1093/nar/gks199
  9. Chen Li-Qing, Hou Bi-Huei, Lalonde Sylvie, Takanaga Hitomi, Hartung Mara L., Qu Xiao-Qing, Guo Woei-Jiun, Kim Jung-Gun, Underwood William, Chaudhuri Bhavna, Chermak Diane, Antony Ginny, White Frank F., Somerville Shauna C., Mudgett Mary Beth, Frommer Wolf B., Sugar transporters for intercellular exchange and nutrition of pathogens, 10.1038/nature09606
  10. Chen L.-Q., Qu X.-Q., Hou B.-H., Sosso D., Osorio S., Fernie A. R., Frommer W. B., Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport, 10.1126/science.1213351
  11. Christian Michelle L., Demorest Zachary L., Starker Colby G., Osborn Mark J., Nyquist Michael D., Zhang Yong, Carlson Daniel F., Bradley Philip, Bogdanove Adam J., Voytas Daniel F., Targeting G with TAL Effectors: A Comparison of Activities of TALENs Constructed with NN and NK Repeat Variable Di-Residues, 10.1371/journal.pone.0045383
  12. Chu Zhaohui, Fu Binying, Yang Hong, Xu Caiguo, Li Zhikang, Sanchez A., Park Y. J., Bennetzen J. L., Zhang Qifa, Wang Shiping, Targeting xa13, a recessive gene for bacterial blight resistance in rice, 10.1007/s00122-005-0145-6
  13. Chu Z., Promoter mutations of an essential gene for pollen development result in disease resistance in rice, 10.1101/gad.1416306
  14. Cong Le, Zhou Ruhong, Kuo Yu-chi, Cunniff Margaret, Zhang Feng, Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains, 10.1038/ncomms1962
  15. Duan Y. P., Castañeda A., Zhao G., Erdos G., Gabriel D. W., Expression of a Single, Host-Specific, Bacterial Pathogenicity Gene in Plant Cells Elicits Division, Enlargement, and Cell Death, 10.1094/mpmi.1999.12.6.556
  16. Edgar R. C., MUSCLE: multiple sequence alignment with high accuracy and high throughput, 10.1093/nar/gkh340
  17. Figurski D. H., Helinski D. R., Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans, 10.1073/pnas.76.4.1648
  18. Gamas Pascal, Use of a Subtractive Hybridization Approach to Identify NewMedicago truncatulaGenes Induced During Root Nodule Development, 10.1094/mpmi-9-0233
  19. Geiβler René, Scholze Heidi, Hahn Simone, Streubel Jana, Bonas Ulla, Behrens Sven-Erik, Boch Jens, Transcriptional Activators of Human Genes with Programmable DNA-Specificity, 10.1371/journal.pone.0019509
  20. Gonzalez Carolina, Szurek Boris, Manceau Charles, Mathieu Thierry, Séré Yacouba, Verdier Valérie, Molecular and Pathotypic Characterization of NewXanthomonas oryzaeStrains from West Africa, 10.1094/mpmi-20-5-0534
  21. Grau Jan, Wolf Annett, Reschke Maik, Bonas Ulla, Posch Stefan, Boch Jens, Computational Predictions Provide Insights into the Biology of TAL Effector Target Sites, 10.1371/journal.pcbi.1002962
  22. Guan Y.-F., Huang X.-Y., Zhu J., Gao J.-F., Zhang H.-X., Yang Z.-N., RUPTURED POLLEN GRAIN1, a Member of the MtN3/saliva Gene Family, Is Crucial for Exine Pattern Formation and Cell Integrity of Microspores in Arabidopsis, 10.1104/pp.108.118026
  23. Hopkins C. M., Identification of a Family of Avirulence Genes fromXanthomonas oryzaepv.oryzae, 10.1094/mpmi-5-451
  24. Kauffman, Plant Disease Management Reports, 57, 537 (1973)
  25. Kay Sabine, Hahn Simone, Marois Eric, Wieduwild Robert, Bonas Ulla, Detailed analysis of the DNA recognition motifs of theXanthomonastype III effectors AvrBs3 and AvrBs3Δrep16, 10.1111/j.1365-313x.2009.03922.x
  26. Kühn Christina, Grof Christopher PL, Sucrose transporters of higher plants, 10.1016/j.pbi.2010.02.001
  27. Lee B.-M., The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice, 10.1093/nar/gki206
  28. Li Ting, Huang Sheng, Zhou Junhui, Yang Bing, Designer TAL Effectors Induce Disease Susceptibility and Resistance to Xanthomonas oryzae pv. Oryzae in Rice, 10.1093/mp/sst034
  29. Li Ting, Liu Bo, Spalding Martin H, Weeks Donald P, Yang Bing, High-efficiency TALEN-based gene editing produces disease-resistant rice, 10.1038/nbt.2199
  30. LIU QINSONG, YUAN MENG, ZHOU YAN, LI XIANGHUA, XIAO JINGHUA, WANG SHIPING, A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice : MtN3/saliva-type gene in rice disease resistance, 10.1111/j.1365-3040.2011.02391.x
  31. Maeder Morgan L, Linder Samantha J, Reyon Deepak, Angstman James F, Fu Yanfang, Sander Jeffry D, Joung J Keith, Robust, synergistic regulation of human gene expression using TALE activators, 10.1038/nmeth.2366
  32. Marois Eric, Van den Ackerveken Guido, Bonas Ulla, TheXanthomonasType III Effector Protein AvrBs3 Modulates Plant Gene Expression and Induces Cell Hypertrophy in the Susceptible Host, 10.1094/mpmi.2002.15.7.637
  33. Miller Jeffrey C, Tan Siyuan, Qiao Guijuan, Barlow Kyle A, Wang Jianbin, Xia Danny F, Meng Xiangdong, Paschon David E, Leung Elo, Hinkley Sarah J, Dulay Gladys P, Hua Kevin L, Ankoudinova Irina, Cost Gregory J, Urnov Fyodor D, Zhang H Steve, Holmes Michael C, Zhang Lei, Gregory Philip D, Rebar Edward J, A TALE nuclease architecture for efficient genome editing, 10.1038/nbt.1755
  34. Morbitzer R., Romer P., Boch J., Lahaye T., Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors, 10.1073/pnas.1013133107
  35. Moscou M. J., Bogdanove A. J., A Simple Cipher Governs DNA Recognition by TAL Effectors, 10.1126/science.1178817
  36. Mussolino Claudio, Cathomen Toni, TALE nucleases: tailored genome engineering made easy, 10.1016/j.copbio.2012.01.013
  37. Nakagawa Tsuyoshi, Kurose Takayuki, Hino Takeshi, Tanaka Katsunori, Kawamukai Makoto, Niwa Yasuo, Toyooka Kiminori, Matsuoka Ken, Jinbo Tetsuro, Kimura Tetsuya, Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation, 10.1263/jbb.104.34
  38. NIÑO-LIU DAVID O., RONALD PAMELA C., BOGDANOVE ADAM J., Xanthomonas oryzae pathovars: model pathogens of a model crop, 10.1111/j.1364-3703.2006.00344.x
  39. Perez-Pinera Pablo, Ousterout David G, Brunger Jonathan M, Farin Alicia M, Glass Katherine A, Guilak Farshid, Crawford Gregory E, Hartemink Alexander J, Gersbach Charles A, Synergistic and tunable human gene activation by combinations of synthetic transcription factors, 10.1038/nmeth.2361
  40. Pérez-Quintero Alvaro L., Rodriguez-R Luis M., Dereeper Alexis, López Camilo, Koebnik Ralf, Szurek Boris, Cunnac Sebastien, An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains, 10.1371/journal.pone.0068464
  41. Quirino Betania F., Normanly Jennifer, Amasino Richard M., 10.1023/a:1006199932265
  42. Kameswara Rao K, Lakshminarasu M, Jena K.K, DNA markers and marker-assisted breeding for durable resistance to bacterial blight disease in rice, 10.1016/s0734-9750(02)00002-2
  43. Reimers P.J., Leach J.E., Race-specific resistance to Xanthomonas oryzae pv. oryzae conferred by bacterial blight resistance gene Xa-10 in rice (Oryza sativa) involves accumulation of a lignin-like substance in host tissues, 10.1016/s0885-5765(05)80141-9
  44. Römer Patrick, Recht Sabine, Strauß Tina, Elsaesser Janett, Schornack Sebastian, Boch Jens, Wang Shiping, Lahaye Thomas, Promoter elements of rice susceptibility genes are bound and activated by specific TAL effectors from the bacterial blight pathogen, Xanthomonas oryzae pv. oryzae, 10.1111/j.1469-8137.2010.03217.x
  45. Salzberg Steven L, Sommer Daniel D, Schatz Michael C, Phillippy Adam M, Rabinowicz Pablo D, Tsuge Seiji, Furutani Ayako, Ochiai Hirokazu, Delcher Arthur L, Kelley David, Madupu Ramana, Puiu Daniela, Radune Diana, Shumway Martin, Trapnell Cole, Aparna Gudlur, Jha Gopaljee, Pandey Alok, Patil Prabhu B, Ishihara Hiromichi, Meyer Damien F, Szurek Boris, Verdier Valerie, Koebnik Ralf, Dow J Maxwell, Ryan Robert P, Hirata Hisae, Tsuyumu Shinji, Won Lee Sang, Ronald Pamela C, Sonti Ramesh V, Van Sluys Marie-Anne, Leach Jan E, White Frank F, Bogdanove Adam J, Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A, 10.1186/1471-2164-9-204
  46. Streubel Jana, Blücher Christina, Landgraf Angelika, Boch Jens, TAL effector RVD specificities and efficiencies, 10.1038/nbt.2304
  47. Talbot Nicholas J., Cell biology: Raiding the sweet shop, 10.1038/468510a
  48. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S., MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, 10.1093/molbev/msr121
  49. LAREBEKE N. VAN, ENGLER G., HOLSTERS M., DEN ELSACKER S. VAN, ZAENEN I., SCHILPEROORT R. A., SCHELL J., Large plasmid in Agrobacterium tumefaciens essential for crown gall-inducing ability, 10.1038/252169a0
  50. Verdier Valérie, Triplett Lindsay R., Hummel Aaron W., Corral Rene, Cernadas R. Andres, Schmidt Clarice L., Bogdanove Adam J., Leach Jan E., Transcription activator-like (TAL) effectors targetingOsSWEETgenes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain ofXanthomonas oryzae, 10.1111/j.1469-8137.2012.04367.x
  51. White F. F., Yang B., Host and Pathogen Factors Controlling the Rice-Xanthomonas oryzae Interaction, 10.1104/pp.109.139360
  52. Yang B., Sugio A., White F. F., Os8N3 is a host disease-susceptibility gene for bacterial blight of rice, 10.1073/pnas.0604088103
  53. Yu Yanhua, Streubel Jana, Balzergue Sandrine, Champion Antony, Boch Jens, Koebnik Ralf, Feng Jiaxun, Verdier Valérie, Szurek Boris, Colonization of Rice Leaf Blades by an African Strain of Xanthomonas oryzae pv. oryzae Depends on a New TAL Effector That Induces the Rice Nodulin-3 Os11N3 Gene, 10.1094/mpmi-11-10-0254
  54. Zhang Feng, Cong Le, Lodato Simona, Kosuri Sriram, Church George M, Arlotta Paola, Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription, 10.1038/nbt.1775