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Comparative genomics and functional analysis of the NiaP family uncover nicotinate transporters from bacteria, plants, and mammals.

Bibliographic reference Jeanguenin, Linda ; Lara-Núñez, Aurora ; Rodionov, Dmitry A ; Osterman, Andrei L ; Komarova, Nataliya Y ; et. al. Comparative genomics and functional analysis of the NiaP family uncover nicotinate transporters from bacteria, plants, and mammals.. In: Functional & integrative genomics, Vol. 12, no. 1, p. 25-34 (2012)
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  1. Allen Elizabeth, Moing Annick, Ebbels Timothy MD, Maucourt Mickaël, Tomos A Deri, Rolin Dominique, Hooks Mark A, Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis, 10.1186/1752-0509-4-62
  2. Breen L. T.,  -NAD is a novel nucleotide released on stimulation of nerve terminals in human urinary bladder detrusor muscle, 10.1152/ajprenal.00314.2005
  3. Breitkreuz Kevin E., Shelp Barry J., Fischer Wolf N., Schwacke Rainer, Rentsch Doris, Identification and characterization of GABA, proline and quaternary ammonium compound transporters fromArabidopsis thaliana, 10.1016/s0014-5793(99)00516-5
  4. Cho Eun Young, Lee Chae Jin, Son Keun Su, Kim Yoo Jung, Kim Sun Jung, Characterization of mouse synaptic vesicle-2-associated protein (Msvop) specifically expressed in the mouse central nervous system, 10.1016/j.gene.2008.10.008
  5. Ciccarelli F. D., Toward Automatic Reconstruction of a Highly Resolved Tree of Life, 10.1126/science.1123061
  6. Dietrich Daniela, Hammes Ulrich, Thor Kathrin, Suter-Grotemeyer Marianne, Flückiger Ricardo, Slusarenko Alan J., Ward John M., Rentsch Doris, AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis : Peptide transporter of Arabidopsis, 10.1111/j.1365-313x.2004.02224.x
  7. Dridi Larbi, Ahmed Ouameur Amin, Ouellette Marc, High AffinityS-Adenosylmethionine Plasma Membrane Transporter ofLeishmaniaIs a Member of the Folate Biopterin Transporter (FBT) Family, 10.1074/jbc.m110.114520
  8. Eudes Aymerick, Kunji Edmund R. S., Noiriel Alexandre, Klaus Sebastian M. J., Vickers Tim J., Beverley Stephen M., Gregory Jesse F., Hanson Andrew D., Identification of Transport-critical Residues in a Folate Transporter from the Folate-Biopterin Transporter (FBT) Family, 10.1074/jbc.m109.063651
  9. Felsenstein Joseph, Evolutionary trees from DNA sequences: A maximum likelihood approach, 10.1007/bf01734359
  10. Ferguson S. M., The Choline Transporter Resurfaces: New Roles for Synaptic Vesicles?, 10.1124/mi.4.1.22
  11. Frelet-Barrand Annie, Boutigny Sylvain, Kunji Edmund R. S., Rolland Norbert, Membrane Protein Expression in Lactococcus lactis, Methods in Molecular Biology (2010) ISBN:9781607613435 p.67-85, 10.1007/978-1-60761-344-2_5
  12. Galperin Michael Y., Koonin Eugene V., Who's your neighbor? New computational approaches for functional genomics, 10.1038/76443
  13. GOPAL Elangovan, FEI You-Jun, MIYAUCHI Seiji, ZHUANG Lina, PRASAD Puttur D., GANAPATHY Vadivel, Sodium-coupled and electrogenic transport of B-complex vitamin nicotinic acid by slc5a8, a member of the Na/glucose co-transporter gene family, 10.1042/bj20041916
  14. Gopal Elangovan, Miyauchi Seiji, Martin Pamela M., Ananth Sudha, Roon Penny, Smith Sylvia B., Ganapathy Vadivel, Transport of Nicotinate and Structurally Related Compounds by Human SMCT1 (SLC5A8) and Its Relevance to Drug Transport in the Mammalian Intestinal Tract, 10.1007/s11095-006-9176-1
  15. HEEGER Volker, LEIENBACH Karl-Wilhelm, BARZ Wolfgang, Stoffwechsel von Nicotinsäure in pflanzlichen Zellsuspensionskulturen, III. Bildung und Stoffwechsel von Trigonellin, 10.1515/bchm2.1976.357.2.1081
  16. Hitz Willlam D., Hanson Andrew D., Determination of glycine betaine by pyrolysis-gas chromatography in cereals and grasses, 10.1016/s0031-9422(00)91029-x
  17. Huson Daniel H, Richter Daniel C, Rausch Christian, Dezulian Tobias, Franz Markus, Rupp Regula, Dendroscope: An interactive viewer for large phylogenetic trees, 10.1186/1471-2105-8-460
  18. Janz R, Hofmann K, Südhof TC (1998) SVOP, an evolutionarily conserved synaptic vesicle protein, suggests novel transport functions of synaptic vesicles. J Neurosci 18:9269–9281
  19. Klaus Sebastian M. J., Kunji Edmund R. S., Bozzo Gale G., Noiriel Alexandre, de la Garza Rocío Díaz, Basset Gilles J. C., Ravanel Stéphane, Rébeillé Fabrice, Gregory Jesse F., Hanson Andrew D., Higher Plant Plastids and Cyanobacteria Have Folate Carriers Related to Those of Trypanosomatids, 10.1074/jbc.m507432200
  20. Konings W. N., Poolman B., Driessen A. J. M., Maloney Peter C., Bioenergetics and Solute Transport in Lactococci, 10.3109/10408418909104474
  21. Kuipers Oscar P, de Ruyter Pascalle G.G.A, Kleerebezem Michiel, de Vos Willem M, Quorum sensing-controlled gene expression in lactic acid bacteria, 10.1016/s0168-1656(98)00100-x
  22. Kunji Edmund R.S, Slotboom Dirk-Jan, Poolman Bert, Lactococcus lactis as host for overproduction of functional membrane proteins, 10.1016/s0005-2736(02)00712-5
  23. Llorente Bertrand, Dujon Bernard, Transcriptional regulation of theSaccharomyces cerevisiae DAL5gene family and identification of the high affinity nicotinic acid permeaseTNA1(YGR260w), 10.1016/s0014-5793(00)01698-7
  24. Ma B., Pan S.-J., Domergue R., Rigby T., Whiteway M., Johnson D., Cormack B. P., High-Affinity Transporters for NAD+ Precursors in Candida glabrata Are Regulated by Hst1 and Induced in Response to Niacin Limitation, 10.1128/mcb.01461-08
  25. McPheat WL, Wardlaw AC (1982) Inhibition of nicotinic acid and nicotinamide uptake into Bordetella pertussis by structural analogues. J Gen Microbiol 128:2681–2685
  26. Mironov Alexander S., Gusarov Ivan, Rafikov Ruslan, Lopez Lubov Errais, Shatalin Konstantin, Kreneva Rimma A., Perumov Daniel A., Nudler Evgeny, Sensing Small Molecules by Nascent RNA, 10.1016/s0092-8674(02)01134-0
  27. Nabokina S. M., Mechanism and regulation of human intestinal niacin uptake, 10.1152/ajpcell.00009.2005
  28. Neujahr Halina Y., Varga Zoltan, Sletten Jorunn, Wagnières Marc, Williams D. H., Bunnenberg E., Djerassi Carl, Records Ruth, Transport of B-Vitamins in Microorganisms. VII. The Uptake of 14C-Niacinamide by Non-proliferating Cells and by Protoplasts of Streptococcus faecalis., 10.3891/acta.chem.scand.20-1529
  29. Neves Ana Rute, Ventura Rita, Mansour Nahla, Shearman Claire, Gasson Michael J., Maycock Christopher, Ramos Ana, Santos Helena, Is the Glycolytic Flux inLactococcus lactisPrimarily Controlled by the Redox Charge? : KINETICS OF NAD+AND NADH POOLS DETERMINEDIN VIVOBY13C NMR, 10.1074/jbc.m202573200
  30. Novichkov Pavel S., Laikova Olga N., Novichkova Elena S., Gelfand Mikhail S., Arkin Adam P., Dubchak Inna, Rodionov Dmitry A., RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes, 10.1093/nar/gkp894
  31. Osterman A, Missing genes in metabolic pathways: a comparative genomics approach, 10.1016/s1367-5931(03)00027-9
  32. Overbeek R., The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes, 10.1093/nar/gki866
  33. Pao SS, Paulsen IT, Saier MH Jr (1998) Major facilitator superfamily. Microbiol Mol Biol Rev 62:1–34
  34. Poolman B, Smid E J, Veldkamp H, Konings W N, Bioenergetic consequences of lactose starvation for continuously cultured Streptococcus cremoris., 10.1128/jb.169.4.1460-1468.1987
  35. Prado Marco A.M, Reis Ricardo A.M, Prado V.F, de Mello Maria Christina, Gomez Marcus V, de Mello Fernando G, Regulation of acetylcholine synthesis and storage, 10.1016/s0197-0186(02)00044-x
  36. Rhodes D, Hanson A D, Quaternary Ammonium and Tertiary Sulfonium Compounds in Higher Plants, 10.1146/annurev.pp.44.060193.002041
  37. Rhodes D., Rich P. J., Brunk D. G., Ju G. C., Rhodes J. C., Pauly M. H., Hansen L. A., Development of Two Isogenic Sweet Corn Hybrids Differing for Glycinebetaine Content, 10.1104/pp.91.3.1112
  38. Rodionov Dmitry A., Comparative Genomic Reconstruction of Transcriptional Regulatory Networks in Bacteria, 10.1021/cr068309+
  39. Rodionov Dmitry A., De Ingeniis Jessica, Mancini Chiara, Cimadamore Flavio, Zhang Hong, Osterman Andrei L., Raffaelli Nadia, Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators, 10.1093/nar/gkn047
  40. Rodionov Dmitry A., Li Xiaoqing, Rodionova Irina A., Yang Chen, Sorci Leonardo, Dervyn Etienne, Martynowski Dariusz, Zhang Hong, Gelfand Mikhail S., Osterman Andrei L., Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon, 10.1093/nar/gkn046
  41. Rodionov D. A., Hebbeln P., Eudes A., ter Beek J., Rodionova I. A., Erkens G. B., Slotboom D. J., Gelfand M. S., Osterman A. L., Hanson A. D., Eitinger T., A Novel Class of Modular Transporters for Vitamins in Prokaryotes, 10.1128/jb.01208-08
  42. Rowe JJ, Lemmon RD, Tritz GJ (1985) Nicotinic acid transport in Escherichia coli. Microbios 44:169–184
  43. Said H. M., Nabokina S. M., Balamurugan K., Mohammed Z. M., Urbina C., Kashyap M. L., Mechanism of nicotinic acid transport in human liver cells: experiments with HepG2 cells and primary hepatocytes, 10.1152/ajpcell.00409.2007
  44. Saier M. H., A Functional-Phylogenetic Classification System for Transmembrane Solute Transporters, 10.1128/mmbr.64.2.354-411.2000
  45. Sarett HP, Perlzweig WA, Levy ED (1940) Synthesis and excretion of trigonelline. J Biol Chem 135:483–485
  46. Shimada Ayumi, Nakagawa Yoko, Morishige Hiroyuki, Yamamoto Akira, Fujita Takuya, Functional characteristics of H+-dependent nicotinate transport in primary cultures of astrocytes from rat cerebral cortex, 10.1016/j.neulet.2005.09.030
  47. Sorci Leonardo, Blaby Ian, De Ingeniis Jessica, Gerdes Svetlana, Raffaelli Nadia, de Crécy Lagard Valérie, Osterman Andrei, Genomics-driven Reconstruction ofAcinetobacterNAD Metabolism : INSIGHTS FOR ANTIBACTERIAL TARGET SELECTION, 10.1074/jbc.m110.185629
  48. Sorci Leonardo, Kurnasov Oleg, Rodionov Dmitry A., Osterman Andrei L., Genomics and Enzymology of NAD Biosynthesis, Comprehensive Natural Products II (2010) ISBN:9780080453828 p.213-257, 10.1016/b978-008045382-8.00138-6
  49. Takanaga Hitomi, Maeda Hiroshi, Yabuuchi Hikaru, Tamai Ikumi, Higashida Haruhiro, Tsuji Akira, Nicotinic Acid Transport Mediated by pH-dependent Anion Antiporter and Proton Cotransporter in Rabbit Intestinal Brush-border Membrane, 10.1111/j.2042-7158.1996.tb05902.x
  50. Thompson J., The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, 10.1093/nar/25.24.4876
  51. Toms Angela V., Haas Amy L., Park Joo-Heon, Begley Tadhg P., Ealick Steven E., Structural Characterization of the Regulatory Proteins TenA and TenI fromBacillus subtilisand Identification of TenA as a Thiaminase II†,‡, 10.1021/bi0478648
  52. Winkler Wade, Nahvi Ali, Breaker Ronald R., Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression, 10.1038/nature01145
  53. Yamboliev Ilia A., Smyth Lisa M., Durnin Leonie, Dai Yanping, Mutafova-Yambolieva Violeta N., Storage and secretion of β-NAD, ATP and dopamine in NGF-differentiated rat pheochromocytoma PC12 cells, 10.1111/j.1460-9568.2009.06869.x
  54. Yao Jia, Bajjalieh Sandra M., SVOP Is a Nucleotide Binding Protein, 10.1371/journal.pone.0005315
  55. Zheng Xin-qiang, Hayashibe Etsuko, Ashihara Hiroshi, Changes in trigonelline (N-methylnicotinic acid) content and nicotinic acid metabolism during germination of mungbean (Phaseolus aureus) seeds, 10.1093/jxb/eri156