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Multiparametric imaging of biological systems by force-distance curve–based AFM

Bibliographic reference Dufrêne, Yves ; Martínez-Martín, David ; Medalsy, Izhar ; Alsteens, David ; Müller, Daniel J. Multiparametric imaging of biological systems by force-distance curve–based AFM. In: Nature Methods : techniques for life scientists and chemists, Vol. 10, no.9, p. 847-854 (2013)
Permanent URL http://hdl.handle.net/2078.1/133358
  1. Ludwig M., Dettmann W., Gaub H.E., Atomic force microscope imaging contrast based on molecular recognition, 10.1016/s0006-3495(97)78685-5
  2. GAD M, MAPPING CELL WALL POLYSACCHARIDES OF LIVING MICROBIAL CELLS USING ATOMIC FORCE MICROSCOPY, 10.1006/cbir.1997.0214
  3. Heinz William F, Hoh Jan H, Spatially resolved force spectroscopy of biological surfaces using the atomic force microscope, 10.1016/s0167-7799(99)01304-9
  4. Grandbois Michel, Dettmann Wolfgang, Benoit Martin, Gaub Hermann E., Affinity Imaging of Red Blood Cells Using an Atomic Force Microscope, 10.1177/002215540004800516
  5. Hinterdorfer Peter, Dufrêne Yves F, Detection and localization of single molecular recognition events using atomic force microscopy, 10.1038/nmeth871
  6. Roos W. H., Bruinsma R., Wuite G. J. L., Physical virology, 10.1038/nphys1797
  7. Gerber Christoph, Lang Hans Peter, How the doors to the nanoworld were opened, 10.1038/nnano.2006.70
  8. Müller Daniel J., Dufrêne Yves F., Atomic force microscopy as a multifunctional molecular toolbox in nanobiotechnology, 10.1038/nnano.2008.100
  9. Butt Hans-Jürgen, Cappella Brunero, Kappl Michael, Force measurements with the atomic force microscope: Technique, interpretation and applications, 10.1016/j.surfrep.2005.08.003
  10. Müller Daniel J, Helenius Jonne, Alsteens David, Dufrêne Yves F, Force probing surfaces of living cells to molecular resolution, 10.1038/nchembio.181
  11. Viani Mario B., Schäffer Tilman E., Chand Ami, Rief Matthias, Gaub Hermann E., Hansma Paul K., Small cantilevers for force spectroscopy of single molecules, 10.1063/1.371039
  12. Viani Mario B., Pietrasanta Lia I., Thompson James B., Chand Ami, Gebeshuber Ilse C., Kindt Johannes H., Richter Michael, Hansma Helen G., Hansma Paul K., 10.1038/77936
  13. Dong Mingdong, Sahin Ozgur, A nanomechanical interface to rapid single-molecule interactions, 10.1038/ncomms1246
  14. Martinez-Martin D., Herruzo E. T., Dietz C., Gomez-Herrero J., Garcia R., Noninvasive Protein Structural Flexibility Mapping by Bimodal Dynamic Force Microscopy, 10.1103/physrevlett.106.198101
  15. Martinez-Martin David, Carrasco Carolina, Hernando-Perez Mercedes, de Pablo Pedro J., Gomez-Herrero Julio, Perez Rebeca, Mateu Mauricio G., Carrascosa Jose L., Kiracofe Daniel, Melcher John, Raman Arvind, Resolving Structure and Mechanical Properties at the Nanoscale of Viruses with Frequency Modulation Atomic Force Microscopy, 10.1371/journal.pone.0030204
  16. Butt H -J, Jaschke M, Calculation of thermal noise in atomic force microscopy, 10.1088/0957-4484/6/1/001
  17. Florin E.-L., Rief M., Lehmann H., Ludwig M., Dornmair C., Moy V.T., Gaub H.E., Sensing specific molecular interactions with the atomic force microscope, 10.1016/0956-5663(95)99227-c
  18. Lee Gil U., Kidwell David A., Colton Richard J., Sensing Discrete Streptavidin-Biotin Interactions with Atomic Force Microscopy, 10.1021/la00014a003
  19. Moy V., Florin E., Gaub H., Intermolecular forces and energies between ligands and receptors, 10.1126/science.7939660
  20. Dammer U., Hegner M., Anselmetti D., Wagner P., Dreier M., Huber W., Güntherodt H.J., Specific antigen/antibody interactions measured by force microscopy, 10.1016/s0006-3495(96)79814-4
  21. Frisbie C. D., Rozsnyai L. F., Noy A., Wrighton M. S., Lieber C. M., Functional Group Imaging by Chemical Force Microscopy, 10.1126/science.265.5181.2071
  22. Lee H., Scherer N. F., Messersmith P. B., Single-molecule mechanics of mussel adhesion, 10.1073/pnas.0605552103
  23. Dague Etienne, Alsteens David, Latgé Jean-Paul, Verbelen Claire, Raze Dominique, Baulard Alain R., Dufrêne Yves F., Chemical Force Microscopy of Single Live Cells, 10.1021/nl071476k
  24. Dorobantu Loredana S., Bhattacharjee Subir, Foght Julia M., Gray Murray R., Atomic Force Microscopy Measurement of Heterogeneity in Bacterial Surface Hydrophobicity, 10.1021/la7035295
  25. Frederix P, Atomic force bio-analytics, 10.1016/j.cbpa.2003.08.010
  26. Tang Jilin, Ebner Andreas, Badelt-Lichtblau Helga, Völlenkle Christine, Rankl Christian, Kraxberger Bernhard, Leitner Michael, Wildling Linda, Gruber Hermann J., Sleytr Uwe B., Ilk Nicola, Hinterdorfer Peter, Recognition Imaging and Highly Ordered Molecular Templating of Bacterial S-Layer Nanoarrays Containing Affinity-Tags, 10.1021/nl802092c
  27. Almqvist N., Bhatia R., Primbs G., Desai N., Banerjee S., Lal R., Elasticity and Adhesion Force Mapping Reveals Real-Time Clustering of Growth Factor Receptors and Associated Changes in Local Cellular Rheological Properties, 10.1016/s0006-3495(04)74243-5
  28. Arnal L., Serra D. O., Cattelan N., Castez M. F., Vázquez L., Salvarezza R. C., Yantorno O. M., Vela M. E., Adhesin Contribution to Nanomechanical Properties of the VirulentBordetella pertussisEnvelope, 10.1021/la300811m
  29. Friedsam Claudia, Bécares Aránzazu Del Campo, Jonas Ulrich, Gaub Hermann E., Seitz Markus, Polymer Functionalized AFM tips for Long-Term Measurements in Single-Molecule Force Spectroscopy, 10.1002/cphc.200300797
  30. Zimmermann Julia L, Nicolaus Thomas, Neuert Gregor, Blank Kerstin, Thiol-based, site-specific and covalent immobilization of biomolecules for single-molecule experiments, 10.1038/nprot.2010.49
  31. Bergkvist Magnus, Cady Nathaniel C., Chemical Functionalization and Bioconjugation Strategies for Atomic Force Microscope Cantilevers, Methods in Molecular Biology (2011) ISBN:9781617791505 p.381-400, 10.1007/978-1-61779-151-2_24
  32. Barattin Régis, Voyer Normand, Chemical Modifications of Atomic Force Microscopy Tips, Methods in Molecular Biology (2011) ISBN:9781617791048 p.457-483, 10.1007/978-1-61779-105-5_28
  33. Bell G., Models for the specific adhesion of cells to cells, 10.1126/science.347575
  34. Evans Evan, Probing the Relation Between Force—Lifetime—and Chemistry in Single Molecular Bonds, 10.1146/annurev.biophys.30.1.105
  35. Evans E. A., Calderwood D. A., Forces and Bond Dynamics in Cell Adhesion, 10.1126/science.1137592
  36. Evans Evan, Introductory Lecture Energy landscapes of biomolecular adhesion and receptor anchoring at interfaces explored with dynamic force spectroscopy, 10.1039/a809884k
  37. Dudko Olga, Hummer Gerhard, Szabo Attila, Intrinsic Rates and Activation Free Energies from Single-Molecule Pulling Experiments, 10.1103/physrevlett.96.108101
  38. Dudko O. K., Hummer G., Szabo A., Theory, analysis, and interpretation of single-molecule force spectroscopy experiments, 10.1073/pnas.0806085105
  39. Medalsy Izhar, Hensen Ulf, Muller Daniel J., Imaging and Quantifying Chemical and Physical Properties of Native Proteins at Molecular Resolution by Force-Volume AFM, 10.1002/anie.201103991
  40. Hansma P. K., Schitter G., Fantner G. E., Prater C., APPLIED PHYSICS: High-Speed Atomic Force Microscopy, 10.1126/science.1133497
  41. Ando Toshio, High-speed atomic force microscopy coming of age, 10.1088/0957-4484/23/6/062001
  42. Dietz C., Zerson M., Riesch C., Gigler A. M., Stark R. W., Rehse N., Magerle R., Nanotomography with enhanced resolution using bimodal atomic force microscopy, 10.1063/1.2907500
  43. Dong Mingdong, Husale Sudhir, Sahin Ozgur, Determination of protein structural flexibility by microsecond force spectroscopy, 10.1038/nnano.2009.156
  44. Fukuma Takeshi, Ueda Yasumasa, Yoshioka Shunsuke, Asakawa Hitoshi, Atomic-Scale Distribution of Water Molecules at the Mica-Water Interface Visualized by Three-Dimensional Scanning Force Microscopy, 10.1103/physrevlett.104.016101
  45. Garcia Ricardo, Herruzo Elena T., The emergence of multifrequency force microscopy, 10.1038/nnano.2012.38
  46. Jaafar Miriam, Martínez-Martín David, Cuenca Mariano, Melcher John, Raman Arvind, Gómez-Herrero Julio, Drive-amplitude-modulation atomic force microscopy: From vacuum to liquids, 10.3762/bjnano.3.38
  47. Giessibl Franz J., Forces and frequency shifts in atomic-resolution dynamic-force microscopy, 10.1103/physrevb.56.16010
  48. Thomas Wendy E., Vogel Viola, Sokurenko Evgeni, Biophysics of Catch Bonds, 10.1146/annurev.biophys.37.032807.125804
  49. Kong Fang, Li Zhenhai, Parks William M., Dumbauld David W., García Andrés J., Mould A. Paul, Humphries Martin J., Zhu Cheng, Cyclic Mechanical Reinforcement of Integrin–Ligand Interactions, 10.1016/j.molcel.2013.01.015
  50. Evans E., Leung A., Heinrich V., Zhu C., Mechanical switching and coupling between two dissociation pathways in a P-selectin adhesion bond, 10.1073/pnas.0401870101
  51. Medalsy Izhar D., Müller Daniel J., Nanomechanical Properties of Proteins and Membranes Depend on Loading Rate and Electrostatic Interactions, 10.1021/nn400015z
  52. Polyakov Pavel, Soussen Charles, Duan Junbo, Duval Jérôme F. L., Brie David, Francius Grégory, Automated Force Volume Image Processing for Biological Samples, 10.1371/journal.pone.0018887
  53. Roduit Charles, Saha Bhaskar, Alonso-Sarduy Livan, Volterra Andrea, Dietler Giovanni, Kasas Sandor, OpenFovea: open-source AFM data processing software, 10.1038/nmeth.2112
  54. Weisenhorn A L, Khorsandi M, Kasas S, Gotzos V, Butt H -J, Deformation and height anomaly of soft surfaces studied with an AFM, 10.1088/0957-4484/4/2/006
  55. Rotsch C., Jacobson K., Radmacher M., Dimensional and mechanical dynamics of active and stable edges in motile fibroblasts investigated by using atomic force microscopy, 10.1073/pnas.96.3.921
  56. Végh Attila G., Fazakas Csilla, Nagy Krisztina, Wilhelm Imola, Krizbai István A., Nagyőszi Péter, Szegletes Zsolt, Váró György, Spatial and temporal dependence of the cerebral endothelial cells elasticity, 10.1002/jmr.1107
  57. Picas Laura, Rico Félix, Deforet Maxime, Scheuring Simon, Structural and Mechanical Heterogeneity of the Erythrocyte Membrane Reveals Hallmarks of Membrane Stability, 10.1021/nn303824j
  58. Heu Celine, Berquand Alexandre, Elie-Caille Celine, Nicod Laurence, Glyphosate-induced stiffening of HaCaT keratinocytes, a Peak Force Tapping study on living cells, 10.1016/j.jsb.2012.02.007
  59. Matzke Rainer, Jacobson Ken, Radmacher Manfred, 10.1038/35078583
  60. Cross Sarah E., Jin Yu-Sheng, Rao Jianyu, Gimzewski James K., Nanomechanical analysis of cells from cancer patients, 10.1038/nnano.2007.388
  61. Plodinec Marija, Loparic Marko, Monnier Christophe A., Obermann Ellen C., Zanetti-Dallenbach Rosanna, Oertle Philipp, Hyotyla Janne T., Aebi Ueli, Bentires-Alj Mohamed, Lim Roderick Y. H., Schoenenberger Cora-Ann, The nanomechanical signature of breast cancer, 10.1038/nnano.2012.167
  62. Francius Grégory, Lebeer Sarah, Alsteens David, Wildling Linda, Gruber Hermann J., Hols Pascal, Keersmaecker Sigrid De, Vanderleyden Jos, Dufrêne Yves F., Detection, Localization, and Conformational Analysis of Single Polysaccharide Molecules on Live Bacteria, 10.1021/nn800341b
  63. Touhami Ahmed, Nysten Bernard, Dufrêne Yves F., Nanoscale Mapping of the Elasticity of Microbial Cells by Atomic Force Microscopy, 10.1021/la034136x
  64. Pletikapić Galja, Berquand Alexandre, Radić Tea Mišić, Svetličić Vesna, QUANTITATIVE NANOMECHANICAL MAPPING OF MARINE DIATOM IN SEAWATER USING PEAK FORCE TAPPING ATOMIC FORCE MICROSCOPY1 : NANOMECHANICAL MAPPING OF MARINE DIATOM, 10.1111/j.1529-8817.2011.01093.x
  65. Roos W. H., Radtke K., Kniesmeijer E., Geertsema H., Sodeik B., Wuite G. J. L., Scaffold expulsion and genome packaging trigger stabilization of herpes simplex virus capsids, 10.1073/pnas.0901514106
  66. Carrasco C., Luque A., Hernando-Pérez M., Miranda R., Carrascosa J.L., Serena P.A., de Ridder M., Raman A., Gómez-Herrero J., Schaap I.A.T., Reguera D., de Pablo P.J., Built-In Mechanical Stress in Viral Shells, 10.1016/j.bpj.2011.01.008
  67. Zink Mareike, Grubmüller Helmut, Mechanical Properties of the Icosahedral Shell of Southern Bean Mosaic Virus: A Molecular Dynamics Study, 10.1016/j.bpj.2008.11.028
  68. Carrasco C., Carreira A., Schaap I. A. T., Serena P. A., Gomez-Herrero J., Mateu M. G., de Pablo P. J., DNA-mediated anisotropic mechanical reinforcement of a virus, 10.1073/pnas.0601881103
  69. Sullan Ruby May A., Li James K., Zou Shan, Direct Correlation of Structures and Nanomechanical Properties of Multicomponent Lipid Bilayers, 10.1021/la900395w
  70. An Hongjie, Nussio Matthew R., Huson Mickey G., Voelcker Nicolas H., Shapter Joseph G., Material Properties of Lipid Microdomains: Force-Volume Imaging Study of the Effect of Cholesterol on Lipid Microdomain Rigidity, 10.1016/j.bpj.2010.04.072
  71. Möller Clemens, Allen Mike, Elings Virgil, Engel Andreas, Müller Daniel J., Tapping-Mode Atomic Force Microscopy Produces Faithful High-Resolution Images of Protein Surfaces, 10.1016/s0006-3495(99)76966-3
  72. Engel Andreas, Müller Daniel J., 10.1038/78929
  73. Rico Felix, Su Chanmin, Scheuring Simon, Mechanical Mapping of Single Membrane Proteins at Submolecular Resolution, 10.1021/nl202351t
  74. Thoma Johannes, Bosshart Patrick, Pfreundschuh Moritz, Müller Daniel J., Out but Not In: The Large Transmembrane β-Barrel Protein FhuA Unfolds but Cannot Refold via β-Hairpins, 10.1016/j.str.2012.10.006
  75. Sweers Kim K. M., van der Werf Kees O., Bennink Martin L., Subramaniam Vinod, Atomic Force Microscopy under Controlled Conditions Reveals Structure of C-Terminal Region of α-Synuclein in Amyloid Fibrils, 10.1021/nn300863n
  76. Zhang S., Andreasen M., Nielsen J. T., Liu L., Nielsen E. H., Song J., Ji G., Sun F., Skrydstrup T., Besenbacher F., Nielsen N. C., Otzen D. E., Dong M., Coexistence of ribbon and helical fibrils originating from hIAPP20-29 revealed by quantitative nanomechanical atomic force microscopy, 10.1073/pnas.1209955110
  77. Wegmann Susanne, Medalsy Izhar D., Mandelkow Eckhard, Müller Daniel J., The fuzzy coat of pathological human Tau fibrils is a two-layered polyelectrolyte brush, 10.1073/pnas.1212100110
  78. Wegmann Susanne, Jung Yu Jin, Chinnathambi Subashchandrabose, Mandelkow Eva-Maria, Mandelkow Eckhard, Muller Daniel J., Human Tau Isoforms Assemble into Ribbon-like Fibrils That Display Polymorphic Structure and Stability, 10.1074/jbc.m110.145318
  79. Alsteens David, Dupres Vincent, Yunus Sami, Latgé Jean-Paul, Heinisch Jürgen J., Dufrêne Yves F., High-Resolution Imaging of Chemical and Biological Sites on Living Cells Using Peak Force Tapping Atomic Force Microscopy, 10.1021/la303891j
  80. Alsteens David, Verbelen Claire, Dague Etienne, Raze Dominique, Baulard Alain R., Dufrêne Yves F., Organization of the mycobacterial cell wall: a nanoscale view, 10.1007/s00424-007-0386-0
  81. Stroh C., Wang H., Bash R., Ashcroft B., Nelson J., Gruber H., Lohr D., Lindsay S. M., Hinterdorfer P., Single-molecule recognition imaging microscopy, 10.1073/pnas.0403538101
  82. Kim H., Arakawa Hideo, Osada Toshiya, Ikai Atsushi, Quantification of cell adhesion force with AFM: distribution of vitronectin receptors on a living MC3T3-E1 cell, 10.1016/s0304-3991(03)00061-5
  83. Kim Hyonchol, Arakawa Hideo, Hatae Noriyuki, Sugimoto Yukihiko, Matsumoto Osamu, Osada Toshiya, Ichikawa Atsushi, Ikai Atsushi, Quantification of the number of EP3 receptors on a living CHO cell surface by the AFM, 10.1016/j.ultramic.2005.12.007
  84. Chtcheglova Lilia A., Waschke Jens, Wildling Linda, Drenckhahn Detlev, Hinterdorfer Peter, Nano-Scale Dynamic Recognition Imaging on Vascular Endothelial Cells, 10.1529/biophysj.107.109751
  85. Roduit Charles, van der Goot F. Gisou, De Los Rios Paolo, Yersin Alexandre, Steiner Pascal, Dietler Giovanni, Catsicas Stefan, Lafont Frank, Kasas Sandor, Elastic Membrane Heterogeneity of Living Cells Revealed by Stiff Nanoscale Membrane Domains, 10.1529/biophysj.107.112862
  86. Dupres Vincent, Menozzi Franco D, Locht Camille, Clare Brian H, Abbott Nicholas L, Cuenot Stéphane, Bompard Coralie, Raze Dominique, Dufrêne Yves F, Nanoscale mapping and functional analysis of individual adhesins on living bacteria, 10.1038/nmeth769