User menu

Congruence between morphological and molecular markers inferred from the analysis of the intra-morphotype genetic diversity and the spatial structure of Oxalis tuberosa Mol.

Bibliographic reference Pissard, Audrey ; Arbizu, Carlos ; Ghislain, Marc ; Faux, Anne-Michelle ; Paulet, Sébastien ; et. al. Congruence between morphological and molecular markers inferred from the analysis of the intra-morphotype genetic diversity and the spatial structure of Oxalis tuberosa Mol.. In: Genetica, Vol. 132, no. 1, p. 71-85 (2008)
Permanent URL http://hdl.handle.net/2078.1/10933
  1. Arbizu C, Tapia M (1992) Tubérculos andinos. In: Hernández Bermajo JE, León S (eds) Cultivos marginados: otra perspectiva de 1492. FAO, Rome, p 147
  2. Arbizu C, Blas R, Holle M, Vivanco F, Ghislain M (1997) Advances in the morphological characterization of oca, ulluco, mashua, and arracacha. Program report 1995–1996. International Potato Center, Lima
  3. Bianco M, Sachs C (1998) Growing oca, ulluco, and mashua in the Andes: socioeconomic differences in cropping practices. Agr Hum Values 15:267–280
  4. Bornet B, Branchard M (2001) Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting. Plant Mol Biol Rep 19:209–215
  5. Cadima X, Almanza J, Garcia W, Terrazas F, Gonzales R, Gandarillas A (2003) Etnobotánica de tubérculos andinos en Candelaria. In: Garcia W, Cadima X (eds) Conservación y uso de la biodiversidad de raíces y tubérculos andinos. Una década de investigación para el desarrollo (1993–2003). Fundación para la Promoción e Investigación de Productos Andinos (PROINPA), Cochabamba, p 49
  6. Chaim AB, Borovsky Y, De Jong W, Paran I (2003) Linkage of the A locus for the presence of anthocyanin and fs10.1, a major fruit-shape QTL in pepper. Theor Appl Genet 106:889–894
  7. Elias M, Panaud O, Robert T (2000) Assessment of genetic variability in a traditional cassava (Manihot esculenta Crantz) farming system, using AFLP markers. Heredity 85:219–230
  8. Elias M, Penet L, Vindry P, McKey D, Panaud O, Robert T (2001) Unmanaged sexual reproduction and the dynamics of genetic diversity of a vegetatively propagated crop plant, cassava (Manihot esculenta Crantz), in a traditional farming system. Mol Ecol 10:1895–1907
  9. Emshwiller E (2002) Biogeography of the Oxalis tuberosa Alliance. Bot Rev 68:128–152
  10. Ford-Lloyd BV, Maxted N (1997) Genetic conservation information management. In: Maxted N, Ford-Lloyd BV, Hawkes JG (eds) Plant genetic conservation. The in situ approach. Chapman & Hall, London
  11. Gibbs PE (1976) Studies on the breeding system of Oxalis tuberosa Mol. Flora 165:129–138
  12. Gower JC (1971) General coefficient of similarity and some of its properties. Biometrics 27:857–874
  13. Halldén C, Hansen M, Nilsson N-O, Hjerdin A (1996) Competition as a source of errors in RAPD analysis. Theor Appl Genet 93:1185–1192
  14. IPGRI-CIP (2001) Descriptores de Oca (Oxalis tuberosa Mol.). Instituto Internacional de Recursos Fitogenéticos, Rome; Centro Internacional de la Papa, Lima
  15. Jaccard P (1908) Nouvelles recherches sur la distribution florale. Bull Soc Vaudoise Sci Nat 44:223–270
  16. Kim DH, Zur G, Danin-Poleg Y, Lee SW, Shim KB, Kang CW, Kashi Y (2002) Genetic relationships of sesame germplasm collection as revealed by inter-simple sequence repeats. Plant Breed 121:259–262
  17. McGregor CE, Lambert CA, Greyling MM, Louw JH, Warnich L (2000) A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.) germplasm. Euphytica 113:135–144
  18. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220
  19. Newbury HJ, Ford-Lloyd BV (1997) Estimation of genetic diversity. In: Maxted N, Ford-Lloyd BV, Hawkes JG (eds) Plant genetic conservation. The in situ approach. Chapman & Hall, London
  20. Ortiz JM, Martin JP, Borrego J, Chávez J, Rodríguez I, Muñoz G, Cabello F (2004) Molecular and morphological characterization of a Vitis gene bank for the establishment of a base collection. Genet Resour Crop Evol 51:403–409
  21. Paetkau D, Slade R, Burdens M, Estoup A (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Mol Ecol 13:55–65
  22. Peakall R, Smouse PE (2005) GenAlEx 6: genetic analysis in excel. Population genetic software for teaching and research. Australian National University, Canberra
  23. Pissard A, Ghislain M, Bertin P (2006) Genetic diversity of the Andean tuber-bearing species, oca (Oxalis tuberosa Mol.), investigated by inter-simple sequence repeats. Genome 49:8–16
  24. Prevost A, Wilkinson MJ (1999) A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor Appl Genet 98:107–112
  25. Ramirez M (2002) On farm conservation of minor tubers in Peru: the dynamics of oca (Oxalis tuberosa) landrace management in a peasant community. Plant Genet Res Newsletter 132:1–9
  26. Sankar AA, Moore GA (2001) Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map. Theor Appl Genet 102:206–214
  27. Smouse PE, Peakall R (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity 82:561–573
  28. Terrazas F, Valdivia G (1998) Spatial dynamics of in situ conservation: handling the genetic diversity of Andean tubers in mosaic systems. Plant Genet Res Newsletter 114:9–15
  29. Trognitz BR, Hermann M, Carrión S (1998) Germplasm conservation of oca (Oxalis tuberosa Mol.) through botanical seed. Seed formation under a system of polymorphic incompatibility. Euphytica 101:133–141
  30. Trognitz BR, Carrión S, Hermann M (2000) Expression of stylar incompatibility in the Andean clonal tuber crop oca (Oxalis tuberosa Mol., Oxalidaceae)
  31. Van de Peer Y, De Wachter R (1994) TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10:569–570
  32. van Eck Herman J., Jacobs Jeanne M. E., van Dijk Jan, Stiekema Willem J., Jacobsen Evert, Identification and mapping of three flower colour loci of potato (S. tuberosum L.) by RFLP analysis, 10.1007/bf00222091
  33. van Eck HJ, Jacobs JME, Stam P, Ton J, Stiekema WJ, Jacobsen E (1994) Multiple alleles for tuber shape in diploid potato detected by qualitative and quantitative genetic analysis using RFLPs. Genetics 137:303–309
  34. van Treuren R, Magda A, Hoekstra R, van Hintum ThJL (2004) Genetic and economic aspects of marker-assisted reduction of redundancy from a wild potato germplasm collection. Genet Resour Crop Evol 51:277–290