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Affichage: 1 - 25 sur 99 résultats.

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    • Article de périodique
    Identification of RSK substrates using an analog-sensitive kinase approach
    Lizcano Perret, Belen[UCL] Vertommen, Didier[UCL] Herinckx, Gaëtan[UCL] Calabrese, Viviane Gatto, Laurent[UCL] Roux, Philippe P. Michiels, Thomas[UCL] (2024) Journal of Biological Chemistry — p. 105739 (2024)
    • Article de périodique
    The Current State of Single‐Cell Proteomics Data Analysis
    Vanderaa, Christophe[UCL] Gatto, Laurent[UCL] (2023) Current Protocols — Vol. 3, no. 1, p. e658 (2023)
    • Article de périodique
    Cardiovirus leader proteins retarget RSK kinases toward alternative substrates to perturb nucleocytoplasmic traffic
    Lizcano Perret, Belen[UCL] Lardinois, Cécile[UCL] Wavreil, Fanny[UCL] Hauchamps, Philippe[UCL] Herinckx, Gaëtan[UCL] Sorgeloos, Frédéric[UCL] Vertommen, Didier[UCL] Gatto, Laurent[UCL] Michiels, Thomas[UCL] (2022) PLoS pathogens — Vol. 18, no. 12, p. e1011042 [1-27] (2022)
    • Article de périodique
    Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
    Gatto, Laurent[UCL] Aebersold, Ruedi Cox, Juergen Demichev, Vadim Derks, Jason Emmott, Edward Franks, Alexander M. Ivanov, Alexander R. Kelly, Ryan T. Khoury, Luke Leduc, Andrew MacCoss, Michael J. Nemes, Peter Perlman, David H. Petelski, Aleksandra A. Rose, Christopher M. Schoof, Erwin M. Van Eyk, Jennifer Vanderaa, Christophe[UCL] Yates, John R. Slavov, Nikolai (2023) Nature Methods — Vol. 20, no.3, p. 375-386 (2023)
    • Article de périodique
    MSnbase, efficient and elegant R-based processing and visualisation of raw mass spectrometry data
    Gatto, Laurent[UCL] Sebastian Gibb Johannes Rainer (2020) bioRxiv — (2020)
    • Article de périodique
    Fast approximate inference for variable selection in Dirichlet process mixtures, with an application to pan-cancer proteomics
    Crook, Oliver M. Gatto, Laurent[UCL] Kirk, Paul D. W. (2019) Statistical Applications in Genetics and Molecular Biology — Vol. 18, no.6 (2019)
    • Article de périodique
    Exploiting the DepMap cancer dependency data using the depmap R package
    Killian, Theo[UCL] Gatto, Laurent[UCL] (2021) F1000Research — Vol. 10, no., p. 416 (2021)
    • Article de périodique
    Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism
    Baers, Laura L. Breckels, Lisa M. Mills, Lauren A. Gatto, Laurent[UCL] Deery, Michael J. Stevens, Tim J. Howe, Christopher J. Lilley, Kathryn S. Lea-Smith, David J. (2019) Plant Physiology — Vol. 181, no.4, p. 1721-1738 (2019)
    • Article de périodique
    A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection
    Oliver M. Crook Aikaterini Geladaki Daniel J.H. Nightingale Owen Vennard Kathryn S. Lilley Paul D.W. Kirk Gatto, Laurent[UCL] (2020) bioRxiv — (2020)
    • Article de périodique
    Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE
    Crook, Oliver M. Davies, Colin T. R. Breckels, Lisa M. Christopher, Josie A. Gatto, Laurent[UCL] Kirk, Paul D. W. Lilley, Kathryn S. (2022) Nature Communications — Vol. 13, no. 1 (2022)
    • Article de périodique
    Preprints help journalism, not hinder it
    Tennant, Jonathan Gatto, Laurent[UCL] Logan, Corina (2018) Nature — Vol. 560, no. 7720, p. 553-553 (2018)
    • Communication
    fmsne: fast multi-scale neighbour embedding in R
    Gatto, Laurent[UCL] De Bodt, Cyril[UCL] (2023) European Bioconductor conference (EuroBioC) — Ghent, Belgium
    • Article de périodique
    MSnbase, efficient and elegant R-based processing and visualisation of raw mass spectrometry data
    Gatto, Laurent[UCL] Gibb, Sebastian Rainer, Johannes (2020) Journal of Proteome Research — (2020)
    • Article de périodique
    ensembldb: an R package to create and use Ensembl-based annotation resources.
    Rainer, Johannes Gatto, Laurent[UCL] Weichenberger, Christian X (2019) Bioinformatics (Oxford, England) — Vol. 35, no. 17, p. 3151-3153 (2019)
    • Article de périodique
    Orchestrating high-throughput genomic analysis with Bioconductor.
    Huber, Wolfgang Carey, Vincent J Gentleman, Robert Anders, Simon Carlson, Marc Carvalho, Benilton S Bravo, Hector Corrada Davis, Sean Gatto, Laurent[UCL] Girke, Thomas Gottardo, Raphael Hahne, Florian Hansen, Kasper D Irizarry, Rafael A Lawrence, Michael Love, Michael I MacDonald, James Obenchain, Valerie Oleś, Andrzej K Pagès, Hervé Reyes, Alejandro Shannon, Paul Smyth, Gordon K Tenenbaum, Dan Waldron, Levi Morgan, Martin (2015) Nature methods — Vol. 12, no.2, p. 115-21 (2015)
    • Article de périodique
    Spatial transcriptomics profiling of gallbladder adenocarcinoma: a detailed two-case study of progression from precursor lesions to cancer.
    Pirenne, Sophie[UCL] Manzano-Núñez, Fátima[UCL] Loriot, Axelle[UCL] Cordi, Sabine[UCL] Desmet, Lieven[UCL] Aydin, Selda[UCL] Hubert, Catherine[UCL] Toffoli, Sébastien Limaye, Nisha[UCL] Sempoux, Christine Komuta, Mina Gatto, Laurent[UCL] Lemaigre, Frédéric[UCL] (2024) BMC cancer — Vol. 24, no.1, p. 1025 (2024)
    • Article de périodique
    Molecular networks in Network Medicine: Development and applications.
    Silverman, Edwin K Schmidt, Harald H H W Anastasiadou, Eleni Altucci, Lucia Angelini, Marco Badimon, Lina Balligand, Jean-Luc[UCL] Benincasa, Giuditta Capasso, Giovambattista Conte, Federica Di Costanzo, Antonella Farina, Lorenzo Fiscon, Giulia Gatto, Laurent[UCL] Gentili, Michele Loscalzo, Joseph Marchese, Cinzia Napoli, Claudio Paci, Paola Petti, Manuela Quackenbush, John Tieri, Paolo Viggiano, Davide Vilahur, Gemma Glass, Kimberly Baumbach, Jan (2020) Wiley interdisciplinary reviews. Systems biology and medicine — Vol. 12, no. 6, p. e1489 (2020)
    • Article de périodique
    Replication of single-cell proteomics data reveals important computational challenges
    Vanderaa, Christophe[UCL] Gatto, Laurent[UCL] (2021) Expert Review of Proteomics — , p. 1-9 (2021)
    • Article de périodique
    BRAFV600E Induction in Thyrocytes Triggers Important Changes in the miRNAs Content and the Populations of Extracellular Vesicles Released in Thyroid Tumor Microenvironment
    Delcorte, Ophélie[UCL] Spourquet, Catherine[UCL] Lemoine, Pascale[UCL] Degosserie, Jonathan[UCL] Van Der Smissen, Patrick[UCL] Dauguet, Nicolas[UCL] Loriot, Axelle[UCL] Knauf, Jeffrey A. Gatto, Laurent[UCL] Marbaix, Etienne[UCL] Fagin, James A. Pierreux, Christophe[UCL] (2022) Biomedicines — Vol. 10, no. 4, p. 755 [1-21] (2022)
    • Article de périodique
    On the many advantages of using the VariantExperiment class to store, exchange and analyze SARS-CoV-2 genomic data and associated metadata
    Ambroise, Jérôme[UCL] Gatto, Laurent[UCL] Hurel, Julie[UCL] Bearzatto, Bertrand[UCL] Gala, Jean-Luc[UCL] (2021) biorXiv —
    • Article de périodique
    The human dental apical papilla promotes spinal cord repair through a paracrine mechanism.
    De Berdt, Pauline Vanvarenberg, Kevin[UCL] Ucakar, Bernard[UCL] Bouzin, Caroline[UCL] Paquot, Adrien[UCL] Gratpain, Viridiane[UCL] Loriot, Axelle[UCL] Payen, Valery Bearzatto, Bertrand[UCL] Muccioli, Giulio[UCL] Gatto, Laurent[UCL] Diogenes, A des Rieux, Anne[UCL] (2022) Cellular and molecular life sciences : CMLS — Vol. 79, no.5, p. 252 (2022)
    • Article de périodique
    SUZ domain-containing proteins have multiple effects on nonsense-mediated decay target transcripts.
    Halbout, Mathias Bury, Marina[UCL] Hanet, Aoife Gerin, Isabelle[UCL] Graff, Julie[UCL] Killian, Theodore[UCL] Gatto, Laurent[UCL] Vertommen, Didier[UCL] Bommer, Guido[UCL] (2023) The Journal of biological chemistry — Vol. ., no..., p. 105095 (2023)
    • Article de périodique
    CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data
    Hauchamps, Philippe[UCL] Bayat, Babak Delandre, Simon Hamrouni, Mehdi Toussaint, Marie Temmerman, Stephane Lin, Dan Gatto, Laurent[UCL] (2024) BMC Bioinformatics — Vol. 25, no.1 (2024)
    • Article de périodique
    Replication of single-cell proteomics data reveals important computational challenges
    Vanderaa, Christophe[UCL] Gatto, Laurent[UCL] (2021) bioRxiv —
    • Article de périodique
    Spatiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the THP-1 human leukaemia cell line
    Mulvey, Claire M. Breckels, Lisa M. Crook, Oliver M. Sanders, David J. Ribeiro, Andre L. R. Geladaki, Aikaterini Christoforou, Andy Britovšek, Nina Kočevar Hurrell, Tracey Deery, Michael J. Gatto, Laurent[UCL] Smith, Andrew M. Lilley, Kathryn S. (2021) Nature Communications — Vol. 12, no.1 (2021)

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