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Partial nucleotide sequence analysis of Turkish isolates of Beet necrotic yellow vein virus (BNYVV) RNA-3

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Yilmaz, N. D. Kutluk Meunier, Alexandre [UCL] Schmit, J. F. Stas, A. Bragard, Claude [UCL]

A survey was carried out to detect Beet necrotic yellow vein virus (BNYVV) in soil samples using RT-PCR and bait plant techniques from the sugar beet production area of Tokat, Turkey in 2001. More than 80% of the soil samples analyzed were found to be contaminated with the virus. The partial nucleotide sequence of cDNA corresponding to RNA-3 of BNYVV isolates were analyzed for six different regions of Tokat province. All isolates were assigned to type A strains based on RFLP analysis and DNA sequences. Sequence comparison revealed differences at amino acid positions 35, 68, 71 and 179 of the P25 coding region amongst Turkish isolates. Additionally, all Turkish isolates were compared with Japanese, French, Kazakh, Italian and Belgian isolates.

Document type Article de périodique (Journal article) – Article de recherche
Publication date 2007
Language Anglais
Journal information "Plant Pathology : a record of current work on plant diseases and pests" - Vol. 56, no. 2, p. 311-316 (2007)
Peer reviewed yes
Publisher Blackwell Publishing (Oxford)
issn 0032-0862
e-issn 1365-3059
Publication status Publié
Affiliation UCL - AGRO/BAPA - Département de biologie appliquée et des productions agricoles
Keywords P25 coding region ; rhizomania ; RNA-3 ; RT-PCR ; sugar beet
Links
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Bibliographic reference Yilmaz, N. D. Kutluk ; Meunier, Alexandre ; Schmit, J. F. ; Stas, A. ; Bragard, Claude. Partial nucleotide sequence analysis of Turkish isolates of Beet necrotic yellow vein virus (BNYVV) RNA-3. In: Plant Pathology : a record of current work on plant diseases and pests, Vol. 56, no. 2, p. 311-316 (2007)
Permanent URL http://hdl.handle.net/2078.1/37717