User menu

Accuracy of image analysis tools for functional root traits: A comment on Delory et al. (2017)

  • Open access
  • PDF
  • 460.98 K
  1. Bauhus Jürgen, Messier Christian, Evaluation of Fine Root Length and Diameter Measurements Obtained Using RHIZO Image Analysis, 10.2134/agronj1999.00021962009100010022x
  2. Bergmann Joana, Ryo Masahiro, Prati Daniel, Hempel Stefan, Rillig Matthias C., Root traits are more than analogues of leaf traits: the case for diaspore mass, 10.1111/nph.14748
  3. Birouste Marine, Zamora-Ledezma Ezequiel, Bossard Carine, Pérez-Ramos Ignacio M., Roumet Catherine, Measurement of fine root tissue density: a comparison of three methods reveals the potential of root dry matter content, 10.1007/s11104-013-1874-y
  4. R Core Team, R: A language and environment for statistical computing (2015)
  5. Delory Benjamin M., Weidlich Emanuela W. A., Meder Leonie, Lütje Anna, van Duijnen Richard, Weidlich Rafael, Temperton Vicky M., Accuracy and bias of methods used for root length measurements in functional root research, 10.1111/2041-210x.12771
  6. Diaz S., Hodgson J.G., Thompson K., Cabido M., Cornelissen J.H.C., Jalili A., Montserrat‐Martí G., Grime J.P., Zarrinkamar F., Asri Y., Band S.R., Basconcelo S., Castro‐Díez P., Funes G., Hamzehee B., Khoshnevi M., Pérez‐Harguindeguy N., Pérez‐Rontomé M.C., Shirvany F.A., Vendramini F., Yazdani S., Abbas‐Azimi R., Bogaard A., Boustani S., Charles M., Dehghan M., Torres‐Espuny L., Falczuk V., Guerrero‐Campo J., Hynd A., Jones G., Kowsary E., Kazemi‐Saeed F., Maestro‐Martínez M., Romo‐Díez A., Shaw S., Siavash B., Villar‐Salvador P., Zak M.R., The plant traits that drive ecosystems: Evidence from three continents, 10.1111/j.1654-1103.2004.tb02266.x
  7. Freschet Grégoire T., Valverde-Barrantes Oscar J., Tucker Caroline M., Craine Joseph M., McCormack M. Luke, Violle Cyrille, Fort Florian, Blackwood Christopher B., Urban-Mead Katherine R., Iversen Colleen M., Bonis Anne, Comas Louise H., Cornelissen Johannes H. C., Dong Ming, Guo Dali, Hobbie Sarah E., Holdaway Robert J., Kembel Steven W., Makita Naoki, Onipchenko Vladimir G., Picon-Cochard Catherine, Reich Peter B., de la Riva Enrique G., Smith Stuart W., Soudzilovskaia Nadejda A., Tjoelker Mark G., Wardle David A., Roumet Catherine, Climate, soil and plant functional types as drivers of global fine-root trait variation, 10.1111/1365-2745.12769
  8. Himmelbauer M.L., Loiskandl ¡AFF1¿W., Kastanek ¡AFF1¿F., Estimating length, average diameter and surface area of roots using two different Image analyses systems, 10.1023/b:plso.0000030171.28821.55
  9. Kimura K., Yamasaki S., 10.1023/a:1025563602641
  10. Lobet Guillaume, Draye Xavier, Périlleux Claire, An online database for plant image analysis software tools, 10.1186/1746-4811-9-38
  11. Lobet Guillaume, Koevoets Iko T., Noll Manuel, Meyer Patrick E., Tocquin Pierre, Pagès Loïc, Périlleux Claire, Using a Structural Root System Model to Evaluate and Improve the Accuracy of Root Image Analysis Pipelines, 10.3389/fpls.2017.00447
  12. Lobet Guillaume, Pound Michael P., Diener Julien, Pradal Christophe, Draye Xavier, Godin Christophe, Javaux Mathieu, Leitner Daniel, Meunier Félicien, Nacry Philippe, Pridmore Tony P., Schnepf Andrea, Root System Markup Language: Toward a Unified Root Architecture Description Language, 10.1104/pp.114.253625
  13. Minervini Massimo, Scharr Hanno, Tsaftaris Sotirios A., The significance of image compression in plant phenotyping applications, 10.1071/fp15033
  14. Pagès Loïc, Bécel Carole, Boukcim Hassan, Moreau Delphine, Nguyen Christophe, Voisin Anne-Sophie, Calibration and evaluation of ArchiSimple, a simple model of root system architecture, 10.1016/j.ecolmodel.2013.11.014
  15. Pierret Alain, Gonkhamdee Santimaitree, Jourdan Christophe, Maeght Jean-Luc, IJ_Rhizo: an open-source software to measure scanned images of root samples, 10.1007/s11104-013-1795-9
  16. Regent G.(2013)WinRHIZO 2013 reg User manual.Quebec Canada.
  17. Rose Laura, Pitfalls in Root Trait Calculations: How Ignoring Diameter Heterogeneity Can Lead to Overestimation of Functional Traits, 10.3389/fpls.2017.00898
  18. Ryser Peter, The mysterious root length, 10.1007/s11104-006-9096-1
  19. Schneider Caroline A, Rasband Wayne S, Eliceiri Kevin W, NIH Image to ImageJ: 25 years of image analysis, 10.1038/nmeth.2089
  20. Wright Ian J., Reich Peter B., Cornelissen Johannes H. C., Falster Daniel S., Garnier Eric, Hikosaka Kouki, Lamont Byron B., Lee William, Oleksyn Jacek, Osada Noriyuki, Poorter Hendrik, Villar Rafael, Warton David I., Westoby Mark, Assessing the generality of global leaf trait relationships, 10.1111/j.1469-8137.2005.01349.x
  21. Zuur Alain F., Ieno Elena N., Elphick Chris S., A protocol for data exploration to avoid common statistical problems : Data exploration, 10.1111/j.2041-210x.2009.00001.x
Bibliographic reference Rose, Laura ; Lobet, Guillaume. Accuracy of image analysis tools for functional root traits: A comment on Delory et al. (2017). In: Methods in Ecology and Evolution, Vol. 10, no.5, p. 702-711 (2019)
Permanent URL http://hdl.handle.net/2078.1/216259