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First Draft Genome Sequence of a Polymyxa Genus Member, Polymyxa betae, the Protist Vector of Rhizomania

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  1. Neuhauser Sigrid, Kirchmair Martin, Bulman Simon, Bass David, Cross-kingdom host shifts of phytomyxid parasites, 10.1186/1471-2148-14-33
  2. 2. Neuhauser S, Bulman S, Kirchmair M. 2010. Plasmodiophorids: the challenge to understand soil-borne, obligate biotrophs with a multiphasic life cycle, p. 51–78. In Gherbawy Y, Voigt K (ed), Molecular identification of fungi. Springer Berlin Heidelberg, Berlin, Germany.
  3. Barr Donald J.S., Morphology and host range ofPolymyxa graminis, Polymyxa betae,andLigniera pilorumfrom Ontario and some other areas, 10.1080/07060667909501468
  4. Kanyuka Konstantin, Ward Elaine, Adams Michael J., Polymyxa graminis and the cereal viruses it transmits: a research challenge, 10.1046/j.1364-3703.2003.00177.x
  5. Tamada Tetsuo, Kondo Hideki, Biological and genetic diversity of plasmodiophorid-transmitted viruses and their vectors, 10.1007/s10327-013-0457-3
  6. Ciaghi Stefan, Neuhauser Sigrid, Schwelm Arne, Draft Genome Resource for the Potato Powdery Scab Pathogen Spongospora subterranea, 10.1094/mpmi-06-18-0163-a
  7. Rolfe Stephen A., Strelkov Stephen E., Links Matthew G., Clarke Wayne E., Robinson Stephen J., Djavaheri Mohammad, Malinowski Robert, Haddadi Parham, Kagale Sateesh, Parkin Isobel A. P., Taheri Ali, Borhan M. Hossein, The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp, 10.1186/s12864-016-2597-2
  8. Schwelm Arne, Fogelqvist Johan, Knaust Andrea, Jülke Sabine, Lilja Tua, Bonilla-Rosso German, Karlsson Magnus, Shevchenko Andrej, Dhandapani Vignesh, Choi Su Ryun, Kim Hong Gi, Park Ju Young, Lim Yong Pyo, Ludwig-Müller Jutta, Dixelius Christina, The Plasmodiophora brassicae genome reveals insights in its life cycle and ancestry of chitin synthases, 10.1038/srep11153
  9. Schwelm Arne, Dixelius Christina, Ludwig-Müller Jutta, New kid on the block – the clubroot pathogen genome moves the plasmodiophorids into the genomic era, 10.1007/s10658-015-0839-9
  10. Dohm Juliane C., Minoche André E., Holtgräwe Daniela, Capella-Gutiérrez Salvador, Zakrzewski Falk, Tafer Hakim, Rupp Oliver, Sörensen Thomas Rosleff, Stracke Ralf, Reinhardt Richard, Goesmann Alexander, Kraft Thomas, Schulz Britta, Stadler Peter F., Schmidt Thomas, Gabaldón Toni, Lehrach Hans, Weisshaar Bernd, Himmelbauer Heinz, The genome of the recently domesticated crop plant sugar beet (Beta vulgaris), 10.1038/nature12817
  11. Legrève Anne, Delfosse Philippe, Vanpee Brigitte, Goffin André, Maraite Henri, 10.1023/a:1008612903927
  12. Brandfass Christoph, Karlovsky Petr, Upscaled CTAB-Based DNA Extraction and Real-Time PCR Assays for Fusarium culmorum and F. graminearum DNA in Plant Material with Reduced Sampling Error, 10.3390/ijms9112306
  13. Bolger Anthony M., Lohse Marc, Usadel Bjoern, Trimmomatic: a flexible trimmer for Illumina sequence data, 10.1093/bioinformatics/btu170
  14. Kang Dongwan D., Froula Jeff, Egan Rob, Wang Zhong, MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities, 10.7717/peerj.1165
  15. Parks Donovan H., Imelfort Michael, Skennerton Connor T., Hugenholtz Philip, Tyson Gene W., CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes, 10.1101/gr.186072.114
  16. Broeksema Bertjan, Calusinska Magdalena, McGee Fintan, Winter Klaas, Bongiovanni Francesco, Goux Xavier, Wilmes Paul, Delfosse Philippe, Ghoniem Mohammad, ICoVeR – an interactive visualization tool for verification and refinement of metagenomic bins, 10.1186/s12859-017-1653-5
  17. Parra G., Bradnam K., Korf I., CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes, 10.1093/bioinformatics/btm071
  18. Marçais Guillaume, Kingsford Carl, A fast, lock-free approach for efficient parallel counting of occurrences of k-mers, 10.1093/bioinformatics/btr011
Bibliographic reference Decroës, Alain ; Calusinska, Magnalena ; Delfosse, Philippe ; Bragard, Claude ; Legrève, Anne ; et. al. First Draft Genome Sequence of a Polymyxa Genus Member, Polymyxa betae, the Protist Vector of Rhizomania. In: Microbiology Resource Announcements, Vol. 8, no.2, p. e01509-18 (2019)
Permanent URL http://hdl.handle.net/2078.1/216006