User menu

Parameter sensitivity analysis of a root system architecture model based on virtual field sampling

  • Open access
  • PDF
  • 4.74 M
  1. Ayachit U (2015) The ParaView guide: a parallel visualization application, Kitware, ISBN 978-1930934306
  2. Azevedo Mateus Carvalho Basilio de, Chopart Jean Louis, Medina Cristiane de Conti, Sugarcane root length density and distribution from root intersection counting on a trench-profile, 10.1590/s0103-90162011000100014
  3. Bardgett Richard D., Mommer Liesje, De Vries Franciska T., Going underground: root traits as drivers of ecosystem processes, 10.1016/j.tree.2014.10.006
  4. Bingham I.J., Bengough A.G., 10.1023/a:1022891519039
  5. Bodner Gernot, Nakhforoosh Alireza, Kaul Hans-Peter, Management of crop water under drought: a review, 10.1007/s13593-015-0283-4
  6. Bodner Gernot, Alsalem Mouhannad, Nakhforoosh Alireza, Arnold Thomas, Leitner Daniel, RGB and Spectral Root Imaging for Plant Phenotyping and Physiological Research: Experimental Setup and Imaging Protocols, 10.3791/56251
  7. Bucksch A., Burridge J., York L. M., Das A., Nord E., Weitz J. S., Lynch J. P., Image-Based High-Throughput Field Phenotyping of Crop Roots, 10.1104/pp.114.243519
  8. Cai Gaochao, Vanderborght Jan, Klotzsche Anja, van der Kruk Jan, Neumann Joschka, Hermes Normen, Vereecken Harry, Construction of Minirhizotron Facilities for Investigating Root Zone Processes, 10.2136/vzj2016.05.0043
  9. Cai Gaochao, Vanderborght Jan, Langensiepen Matthias, Schnepf Andrea, Hüging Hubert, Vereecken Harry, Root growth, water uptake, and sap flow of winter wheat in response to different soil water conditions, 10.5194/hess-22-2449-2018
  10. Campolongo Francesca, Cariboni Jessica, Saltelli Andrea, An effective screening design for sensitivity analysis of large models, 10.1016/j.envsoft.2006.10.004
  11. Chen Xinxin, Ding Qishuo, Błaszkiewicz Zbigniew, Sun Jiuai, Sun Qian, He Ruiyin, Li Yinian, Phenotyping for the dynamics of field wheat root system architecture, 10.1038/srep37649
  12. Clark R. T., MacCurdy R. B., Jung J. K., Shaff J. E., McCouch S. R., Aneshansley D. J., Kochian L. V., Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform, 10.1104/pp.110.169102
  13. Colombi Tino, Kirchgessner Norbert, Walter Achim, Keller Thomas, Root Tip Shape Governs Root Elongation Rate under Increased Soil Strength, 10.1104/pp.17.00357
  14. Comas Louise H., Becker Steven R., Cruz Von Mark V., Byrne Patrick F., Dierig David A., Root traits contributing to plant productivity under drought, 10.3389/fpls.2013.00442
  15. Couvreur V., Vanderborght J., Beff L., Javaux M., Horizontal soil water potential heterogeneity: simplifying approaches for crop water dynamics models, 10.5194/hess-18-1723-2014
  16. de Dorlodot Sophie, Forster Brian, Pagès Loïc, Price Adam, Tuberosa Roberto, Draye Xavier, Root system architecture: opportunities and constraints for genetic improvement of crops, 10.1016/j.tplants.2007.08.012
  17. Dunbabin Vanessa M., Postma Johannes A., Schnepf Andrea, Pagès Loïc, Javaux Mathieu, Wu Lianhai, Leitner Daniel, Chen Ying L., Rengel Zed, Diggle Art J., Modelling root–soil interactions using three–dimensional models of root growth, architecture and function, 10.1007/s11104-013-1769-y
  18. Fan Jianling, McConkey Brian, Wang Hong, Janzen Henry, Root distribution by depth for temperate agricultural crops, 10.1016/j.fcr.2016.02.013
  19. Fan Ying, Miguez-Macho Gonzalo, Jobbágy Esteban G., Jackson Robert B., Otero-Casal Carlos, Hydrologic regulation of plant rooting depth, 10.1073/pnas.1712381114
  20. Feldman L (1994) The maize root. In: Freeling M, Walbot V (eds) The maize handbook. Springer New York, New York
  21. Garré S., Pagès L., Laloy E., Javaux M., Vanderborght* J., Vereecken H., Parameterizing a Dynamic Architectural Model of the Root System of Spring Barley from Minirhizotron Data, 10.2136/vzj2011.0179
  22. Grabarnik Pavel, Pagès Loíc, Bengough Anthony Glyn, 10.1023/a:1004382531671
  23. Gregory PJ (2006) Roots and the architecture of root systems. Plant roots. Blackwell Publishing Ltd, Oxford
  24. Gregory PJ (2009) Measuring root system architecture: opportunities and challenges. In: International Symposium “Root Research and Applications” RootRAP, Vienna, Austria
  25. Hamada Alhosein, Nitta Miyuki, Nasuda Shuhei, Kato Kenji, Fujita Masaya, Matsunaka Hitoshi, Okumoto Yutaka, Novel QTLs for growth angle of seminal roots in wheat (Triticum aestivum L.), 10.1007/s11104-011-1075-5
  26. Hang LTT (2011) Quantifying root length density from soil auger samples: comparison of methods and effects of sample size. Institute of Organic Agriculture, Faculty of Agriculture. Rheinischen Friedrich-Wilhelms-Universität Bonn, Bonn
  27. Hoad SP, Russell G, Kettlewell PS, Belshaw M (2004) Root system management in winter wheat: practices to increase water and nitrogen use. Agriculture and Horticulture Development Board, Kenilworth, Warwickshire
  28. Hochholdinger Frank, Tuberosa Roberto, Genetic and genomic dissection of maize root development and architecture, 10.1016/j.pbi.2008.12.002
  29. Kalogiros Dimitris I., Adu Michael O., White Philip J., Broadley Martin R., Draye Xavier, Ptashnyk Mariya, Bengough A. Glyn, Dupuy Lionel X., Analysis of root growth from a phenotyping data set using a density-based model, 10.1093/jxb/erv573
  30. Kolb Lauren N., Gallandt Eric R., Mallory Ellen B., Impact of Spring Wheat Planting Density, Row Spacing, and Mechanical Weed Control on Yield, Grain Protein, and Economic Return in Maine, 10.1614/ws-d-11-00118.1
  31. Kuijken René C.P., van Eeuwijk Fred. A., Marcelis Leo F.M., Bouwmeester Harro J., Root phenotyping: from component trait in the lab to breeding: Table 1., 10.1093/jxb/erv239
  32. Kutschera L (1960) Wurzelatlas mitteleuropäischer Ackerunkräuter und Kulturpflanzen. DLG Verlag, Frankfurt am Main
  33. Landl Magdalena, Schnepf Andrea, Vanderborght Jan, Bengough A. Glyn, Bauke Sara L., Lobet Guillaume, Bol Roland, Vereecken Harry, Measuring root system traits of wheat in 2D images to parameterize 3D root architecture models, 10.1007/s11104-018-3595-8
  34. Leitner Daniel, Klepsch Sabine, Bodner Gernot, Schnepf Andrea, A dynamic root system growth model based on L-Systems : Tropisms and coupling to nutrient uptake from soil, 10.1007/s11104-010-0284-7
  35. Leitner D., Felderer B., Vontobel P., Schnepf A., Recovering Root System Traits Using Image Analysis Exemplified by Two-Dimensional Neutron Radiography Images of Lupine, 10.1104/pp.113.227892
  36. Lipiec J., Siczek A., Sochan A., Bieganowski A., Effect of sand grain shape on root and shoot growth of wheat seedlings, 10.1016/j.geoderma.2015.10.022
  37. Lobet Guillaume, Pound Michael P., Diener Julien, Pradal Christophe, Draye Xavier, Godin Christophe, Javaux Mathieu, Leitner Daniel, Meunier Félicien, Nacry Philippe, Pridmore Tony P., Schnepf Andrea, Root System Markup Language: Toward a Unified Root Architecture Description Language, 10.1104/pp.114.253625
  38. Lynch J., Root Architecture and Plant Productivity, 10.1104/pp.109.1.7
  39. Meunier F., Couvreur V., Draye X., Vanderborght J., Javaux M., Towards quantitative root hydraulic phenotyping: novel mathematical functions to calculate plant-scale hydraulic parameters from root system functional and structural traits, 10.1007/s00285-017-1111-z
  40. Morris Max D., Factorial Sampling Plans for Preliminary Computational Experiments, 10.1080/00401706.1991.10484804
  41. Muñoz-Romero Verónica, Benítez-Vega Jorge, López-Bellido Rafael J., Fontán José M., López-Bellido Luis, Effect of tillage system on the root growth of spring wheat, 10.1007/s11104-009-9983-3
  42. Nagel Kerstin A., Kastenholz Bernd, Jahnke Siegfried, van Dusschoten Dagmar, Aach Til, Mühlich Matthias, Truhn Daniel, Scharr Hanno, Terjung Stefan, Walter Achim, Schurr Ulrich, Temperature responses of roots: impact on growth, root system architecture and implications for phenotyping, 10.1071/fp09184
  43. Pagès Loïc, Picon-Cochard Catherine, Modelling the root system architecture of Poaceae. Can we simulate integrated traits from morphological parameters of growth and branching?, 10.1111/nph.12904
  44. Pagès Loïc, Vercambre Gilles, Drouet Jean-Louis, Lecompte François, Collet Catherine, Le Bot Jacques, Root Typ: a generic model to depict and analyse the root system architecture, 10.1023/b:plso.0000016540.47134.03
  45. Pagès L, Bruchou C, Garré S (2012) Links between root length density profiles and models of the root system architecture. Vadose Zone J 11
  46. Pagès Loïc, Xie Jun, Serra Valérie, Potential and actual root growth variations in root systems: modeling them with a two-step stochastic approach, 10.1007/s11104-013-1820-z
  47. Passot Sixtine, Couvreur Valentin, Meunier Félicien, Draye Xavier, Javaux Mathieu, Leitner Daniel, Pagès Loïc, Schnepf Andrea, Vanderborght Jan, Lobet Guillaume, Connecting the dots between computational tools to analyse soil-root water relations, 10.1093/jxb/ery361
  48. Perkons Ute, Kautz Timo, Uteau Daniel, Peth Stephan, Geier Vanessa, Thomas Katharina, Lütke Holz Katharina, Athmann Miriam, Pude Ralf, Köpke Ulrich, Root-length densities of various annual crops following crops with contrasting root systems, 10.1016/j.still.2013.11.005
  49. Ruano M.V., Ribes J., Seco A., Ferrer J., An improved sampling strategy based on trajectory design for application of the Morris method to systems with many input factors, 10.1016/j.envsoft.2012.03.008
  50. Schnepf A, Leitner D, Lobet G, Mai TH, Zörner M, Landl M, Sheng C, Morandage S, Vanderborght J, Vereecken H (2017) Triticum aestivum - CRootBox parameter file.figshare. Fileset. . Accessed 26 Aug 2017
  51. Schnepf A., Huber K., Landl M., Meunier F., Petrich L., Schmidt V., Statistical Characterization of the Root System Architecture Model CRootBox, 10.2136/vzj2017.12.0212
  52. Schnepf Andrea, Leitner Daniel, Landl Magdalena, Lobet Guillaume, Mai Trung Hieu, Morandage Shehan, Sheng Cheng, Zörner Mirjam, Vanderborght Jan, Vereecken Harry, CRootBox: a structural–functional modelling framework for root systems, 10.1093/aob/mcx221
  53. Schroth G�tz, Kolbe Dorothee, A method of processing soil core samples for root studies by subsampling, 10.1007/bf00336446
  54. Smit A. L., George E., Groenwold J., Root Observations and Measurements at (Transparent) Interfaces with Soil, Root Methods (2000) ISBN:9783642086021 p.235-271, 10.1007/978-3-662-04188-8_8
  55. Vansteenkiste Joachim, Van Loon Jelle, Garré Sarah, Pagès Loïc, Schrevens Eddie, Diels Jan, Estimating the parameters of a 3-D root distribution function from root observations with the trench profile method: case study with simulated and field-observed root data, 10.1007/s11104-013-1942-3
  56. Wasson A. P., Richards R. A., Chatrath R., Misra S. C., Prasad S. V. S., Rebetzke G. J., Kirkegaard J. A., Christopher J., Watt M., Traits and selection strategies to improve root systems and water uptake in water-limited wheat crops, 10.1093/jxb/ers111
  57. Wasson A. P., Rebetzke G. J., Kirkegaard J. A., Christopher J., Richards R. A., Watt M., Soil coring at multiple field environments can directly quantify variation in deep root traits to select wheat genotypes for breeding, 10.1093/jxb/eru250
  58. Weaver J. E., Kramer Joseph, Reed Maud, Development of Root and Shoot of Winter Wheat Under Field Environment, 10.2307/1929162
Bibliographic reference Morandage, Shehan ; Schnepf, Andrea ; Leitner, Daniel ; Javaux, Mathieu ; Vereecken, Harry ; et. al. Parameter sensitivity analysis of a root system architecture model based on virtual field sampling. In: Plant and Soil, (2019)
Permanent URL