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A European Database of Fusarium graminearum and F. culmorum Trichothecene Genotypes

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Pasquali, Matias [Luxembourg Institute of Science and Technology] Beyer, Marco [Luxembourg Institute of Science and Technology] Logrieco, Antonio [Institute of Sciences of Food Production, Italy] Audenaert, Kris [Ghent University, Belgium] Balmas, Virgilio [University of Sassari, Italy] Munaut, Françoise [UCL] Scauflaire, Jonathan [UCL] Vogelgsang, Susanne [Institute for Sustainability Sciences, Zurich, Switzerland]

Fusarium species, particularly Fusarium graminearum and F. culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000–2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F. graminearum, 479 F. culmorum, and 3 F. cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. graminearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F. culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.

Document type Article de périodique (Journal article) – Article de recherche
Access type Accès libre
Publication date 2016
Language Anglais
Journal information "Frontiers in Microbiology" - Vol. 7, no.406, p. 1-11 (2016)
Peer reviewed yes
Publisher Frontiers Research Foundation
issn 1664-302X
e-issn 1664-302X
Publication status Publié
Affiliation UCL - SST/ELI/ELIM - Applied Microbiology
Keywords 3135
Links
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Bibliographic reference Pasquali, Matias ; Beyer, Marco ; Logrieco, Antonio ; Audenaert, Kris ; Balmas, Virgilio ; et. al. A European Database of Fusarium graminearum and F. culmorum Trichothecene Genotypes. In: Frontiers in Microbiology, Vol. 7, no.406, p. 1-11 (2016)
Permanent URL http://hdl.handle.net/2078.1/177350