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Gut microbiota signatures predict host and microbiota responses to dietary interventions in obese individuals

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  1. Bäckhed Fredrik, Host responses to the human microbiome, 10.1111/j.1753-4887.2012.00496.x
  2. Holmes E., Kinross J., Gibson G. R., Burcelin R., Jia W., Pettersson S., Nicholson J. K., Therapeutic Modulation of Microbiota-Host Metabolic Interactions, 10.1126/scitranslmed.3004244
  3. Million M., Lagier J.-C., Yahav D., Paul M., Gut bacterial microbiota and obesity, 10.1111/1469-0691.12172
  4. Everard Amandine, Cani Patrice D., Diabetes, obesity and gut microbiota, 10.1016/j.bpg.2013.03.007
  5. Flint Harry J., Obesity and the Gut Microbiota : , 10.1097/mcg.0b013e31821f44c4
  6. Kootte R. S., Vrieze A., Holleman F., Dallinga-Thie G. M., Zoetendal E. G., de Vos W. M., Groen A. K., Hoekstra J. B. L., Stroes E. S., Nieuwdorp M., The therapeutic potential of manipulating gut microbiota in obesity and type 2 diabetes mellitus, 10.1111/j.1463-1326.2011.01483.x
  7. Delzenne Nathalie M., Neyrinck Audrey M., Bäckhed Fredrik, Cani Patrice D., Targeting gut microbiota in obesity: effects of prebiotics and probiotics, 10.1038/nrendo.2011.126
  8. Walker Alan W., Lawley Trevor D., Therapeutic modulation of intestinal dysbiosis, 10.1016/j.phrs.2012.09.008
  9. Lozupone Catherine A., Stombaugh Jesse I., Gordon Jeffrey I., Jansson Janet K., Knight Rob, Diversity, stability and resilience of the human gut microbiota, 10.1038/nature11550
  10. Lampe Johanna W., Navarro Sandi L., Hullar Meredith A. J., Shojaie Ali, Inter-individual differences in response to dietary intervention: integrating omics platforms towards personalised dietary recommendations, 10.1017/s0029665113000025
  11. P Louis, Agro Food Industry Hi-Tech, 23, 26 (2012)
  12. Walker Alan W, Ince Jennifer, Duncan Sylvia H, Webster Lucy M, Holtrop Grietje, Ze Xiaolei, Brown David, Stares Mark D, Scott Paul, Bergerat Aurore, Louis Petra, McIntosh Freda, Johnstone Alexandra M, Lobley Gerald E, Parkhill Julian, Flint Harry J, Dominant and diet-responsive groups of bacteria within the human colonic microbiota, 10.1038/ismej.2010.118
  13. McOrist A. L., Miller R. B., Bird A. R., Keogh J. B., Noakes M., Topping D. L., Conlon M. A., Fecal Butyrate Levels Vary Widely among Individuals but Are Usually Increased by a Diet High in Resistant Starch, 10.3945/jn.110.128504
  14. Haiser H. J., Turnbaugh P. J., Is It Time for a Metagenomic Basis of Therapeutics?, 10.1126/science.1224396
  15. Harmon J. P., Moran N. A., Ives A. R., Species Response to Environmental Change: Impacts of Food Web Interactions and Evolution, 10.1126/science.1167396
  16. Lappi J., Salojarvi J., Kolehmainen M., Mykkanen H., Poutanen K., de Vos W. M., Salonen A., Intake of Whole-Grain and Fiber-Rich Rye Bread Versus Refined Wheat Bread Does Not Differentiate Intestinal Microbiota Composition in Finnish Adults with Metabolic Syndrome, 10.3945/jn.112.172668
  17. Salonen Anne, Nikkilä Janne, Jalanka-Tuovinen Jonna, Immonen Outi, Rajilić-Stojanović Mirjana, Kekkonen Riina A., Palva Airi, de Vos Willem M., Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis, 10.1016/j.mimet.2010.02.007
  18. Dewulf Evelyne M, Cani Patrice D, Claus Sandrine P, Fuentes Susana, Puylaert Philippe GB, Neyrinck Audrey M, Bindels Laure B, de Vos Willem M, Gibson Glenn R, Thissen Jean-Paul, Delzenne Nathalie M, Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women, 10.1136/gutjnl-2012-303304
  19. Lobley Gerald, Holtrop Grietje, Bremner David, Calder A., Milne Eric, Johnstone Alexandra, Impact of Short Term Consumption of Diets High in Either Non-Starch Polysaccharides or Resistant Starch in Comparison with Moderate Weight Loss on Indices of Insulin Sensitivity in Subjects with Metabolic Syndrome, 10.3390/nu5062144
  20. J Jalanka-Tuovinen, 6, e23035 (2011)
  21. Rajilić-Stojanović Mirjana, Heilig Hans G. H. J., Molenaar Douwe, Kajander Kajsa, Surakka Anu, Smidt Hauke, de Vos Willem M., Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults, 10.1111/j.1462-2920.2009.01900.x
  22. Bolstad B.M., Irizarry R.A, Astrand M., Speed T.P., A comparison of normalization methods for high density oligonucleotide array data based on variance and bias, 10.1093/bioinformatics/19.2.185
  23. Nikkilä Janne, de Vos Willem M., Advanced Approaches to Characterize the Human Intestinal Microbiota by Computational Meta-analysis : , 10.1097/mcg.0b013e3181e5018f
  24. Maukonen Johanna, Simões Catarina, Saarela Maria, The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples, 10.1111/j.1574-6941.2011.01257.x
  25. R Development Core Team (2011) R: A language and environment for statistical computing Vienna, Austria: R Foundation for Statistical Computing.
  26. Robin Xavier, Turck Natacha, Hainard Alexandre, Tiberti Natalia, Lisacek Frédérique, Sanchez Jean-Charles, Müller Markus, pROC: an open-source package for R and S+ to analyze and compare ROC curves, 10.1186/1471-2105-12-77
  27. Martínez Inés, Lattimer James M, Hubach Kelcie L, Case Jennifer A, Yang Junyi, Weber Casey G, Louk Julie A, Rose Devin J, Kyureghian Gayaneh, Peterson Daniel A, Haub Mark D, Walter Jens, Gut microbiome composition is linked to whole grain-induced immunological improvements, 10.1038/ismej.2012.104
  28. Karlsson Fredrik H., Tremaroli Valentina, Nookaew Intawat, Bergström Göran, Behre Carl Johan, Fagerberg Björn, Nielsen Jens, Bäckhed Fredrik, Gut metagenome in European women with normal, impaired and diabetic glucose control, 10.1038/nature12198
  29. Qin Junjie, Li Yingrui, Cai Zhiming, Li Shenghui, Zhu Jianfeng, Zhang Fan, Liang Suisha, Zhang Wenwei, Guan Yuanlin, Shen Dongqian, Peng Yangqing, Zhang Dongya, Jie Zhuye, Wu Wenxian, Qin Youwen, Xue Wenbin, Li Junhua, Han Lingchuan, Lu Donghui, Wu Peixian, Dai Yali, Sun Xiaojuan, Li Zesong, Tang Aifa, Zhong Shilong, Li Xiaoping, Chen Weineng, Xu Ran, Wang Mingbang, Feng Qiang, Gong Meihua, Yu Jing, Zhang Yanyan, Zhang Ming, Hansen Torben, Sanchez Gaston, Raes Jeroen, Falony Gwen, Okuda Shujiro, Almeida Mathieu, LeChatelier Emmanuelle, Renault Pierre, Pons Nicolas, Batto Jean-Michel, Zhang Zhaoxi, Chen Hua, Yang Ruifu, Zheng Weimou, Li Songgang, Yang Huanming, Wang Jian, Ehrlich S. Dusko, Nielsen Rasmus, Pedersen Oluf, Kristiansen Karsten, Wang Jun, A metagenome-wide association study of gut microbiota in type 2 diabetes, 10.1038/nature11450
  30. Papa Eliseo, Docktor Michael, Smillie Christopher, Weber Sarah, Preheim Sarah P., Gevers Dirk, Giannoukos Georgia, Ciulla Dawn, Tabbaa Diana, Ingram Jay, Schauer David B., Ward Doyle V., Korzenik Joshua R., Xavier Ramnik J., Bousvaros Athos, Alm Eric J., Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease, 10.1371/journal.pone.0039242
  31. Mutch David M., Temanni M. Ramzi, Henegar Corneliu, Combes Florence, Pelloux Véronique, Holst Claus, Sørensen Thorkild I. A., Astrup Arne, Martinez J. Alfredo, Saris Wim H. M., Viguerie Nathalie, Langin Dominique, Zucker Jean-Daniel, Clément Karine, Adipose Gene Expression Prior to Weight Loss Can Differentiate and Weakly Predict Dietary Responders, 10.1371/journal.pone.0001344
  32. Faith J. J., Guruge J. L., Charbonneau M., Subramanian S., Seedorf H., Goodman A. L., Clemente J. C., Knight R., Heath A. C., Leibel R. L., Rosenbaum M., Gordon J. I., The Long-Term Stability of the Human Gut Microbiota, 10.1126/science.1237439
  33. Lahti Leo, Salonen Anne, Kekkonen Riina A., Salojärvi Jarkko, Jalanka-Tuovinen Jonna, Palva Airi, Orešič Matej, de Vos Willem M., Associations between the human intestinal microbiota,Lactobacillus rhamnosusGG and serum lipids indicated by integrated analysis of high-throughput profiling data, 10.7717/peerj.32
  34. Velagapudi Vidya R., Hezaveh Rahil, Reigstad Christopher S., Gopalacharyulu Peddinti, Yetukuri Laxman, Islam Sama, Felin Jenny, Perkins Rosie, Borén Jan, Orešič Matej, Bäckhed Fredrik, The gut microbiota modulates host energy and lipid metabolism in mice, 10.1194/jlr.m002774
  35. W Moore, Appl Microbiol, 27, 961 (1974)
  36. Louis P., Duncan S. H., McCrae S. I., Millar J., Jackson M. S., Flint H. J., Restricted Distribution of the Butyrate Kinase Pathway among Butyrate-Producing Bacteria from the Human Colon, 10.1128/jb.186.7.2099-2106.2004
  37. Rainey FA, Hollen BJ, Small A (2009) Genus I. clostridium. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, et al., editors. Bergey's manual of systematic bacteriology. Springer. pp. 774–781.
  38. N Nakamura, Food Science and Technology, 1, 363 (2010)
  39. Arumugam Manimozhiyan, Raes Jeroen, Pelletier Eric, Le Paslier Denis, Yamada Takuji, Mende Daniel R., Fernandes Gabriel R., Tap Julien, Bruls Thomas, Batto Jean-Michel, Bertalan Marcelo, Borruel Natalia, Casellas Francesc, Fernandez Leyden, Gautier Laurent, Hansen Torben, Hattori Masahira, Hayashi Tetsuya, Kleerebezem Michiel, Kurokawa Ken, Leclerc Marion, Levenez Florence, Manichanh Chaysavanh, Nielsen H. Bjørn, Nielsen Trine, Pons Nicolas, Poulain Julie, Qin Junjie, Sicheritz-Ponten Thomas, Tims Sebastian, Torrents David, Ugarte Edgardo, Zoetendal Erwin G., Wang Jun, Guarner Francisco, Pedersen Oluf, de Vos Willem M., Brunak Søren, Doré Joel, Antolín María, Artiguenave François, Blottiere Hervé M., Almeida Mathieu, Brechot Christian, Cara Carlos, Chervaux Christian, Cultrone Antonella, Delorme Christine, Denariaz Gérard, Dervyn Rozenn, Foerstner Konrad U., Friss Carsten, van de Guchte Maarten, Guedon Eric, Haimet Florence, Huber Wolfgang, van Hylckama-Vlieg Johan, Jamet Alexandre, Juste Catherine, Kaci Ghalia, Knol Jan, Lakhdari Omar, Layec Severine, Le Roux Karine, Maguin Emmanuelle, Mérieux Alexandre, Melo Minardi Raquel, M'rini Christine, Muller Jean, Oozeer Raish, Parkhill Julian, Renault Pierre, Rescigno Maria, Sanchez Nicolas, Sunagawa Shinichi, Torrejon Antonio, Turner Keith, Vandemeulebrouck Gaetana, Varela Encarna, Winogradsky Yohanan, Zeller Georg, Weissenbach Jean, Ehrlich S. Dusko, Bork Peer, Enterotypes of the human gut microbiome, 10.1038/nature09944
  40. Cotillard Aurélie, Kennedy Sean P., Kong Ling Chun, Prifti Edi, Pons Nicolas, Le Chatelier Emmanuelle, Almeida Mathieu, Quinquis Benoit, Levenez Florence, Galleron Nathalie, Gougis Sophie, Rizkalla Salwa, Batto Jean-Michel, Renault Pierre, consortium ANR MicroObes, Doré Joel, Zucker Jean-Daniel, Clément Karine, Ehrlich Stanislav Dusko, Blottière Hervé, Leclerc Marion, Juste Catherine, de Wouters Tomas, Lepage Patricia, Fouqueray Charlene, Basdevant Arnaud, Henegar Cornelieu, Godard Cindy, Fondacci Marine, Rohia Alili, Hajduch Froogh, Weissenbach Jean, Pelletier Eric, Le Paslier Denis, Gauchi Jean-Pierre, Gibrat Jean-François, Loux Valentin, Carré Wilfrid, Maguin Emmanuelle, van de Guchte Maarten, Jamet Alexandre, Boumezbeur Fouad, Layec Séverine, Dietary intervention impact on gut microbial gene richness, 10.1038/nature12480
  41. Rydgren Knut, Økland Rune Halvorsen, Økland Tonje, Species response curves along environmental gradients. A case study from SE Norwegian swamp forests, 10.1111/j.1654-1103.2003.tb02220.x
  42. Davis L.M.G., Martínez I., Walter J., Hutkins R., A dose dependent impact of prebiotic galactooligosaccharides on the intestinal microbiota of healthy adults, 10.1016/j.ijfoodmicro.2010.10.007
  43. Kolida S, Meyer D, Gibson G R, A double-blind placebo-controlled study to establish the bifidogenic dose of inulin in healthy humans, 10.1038/sj.ejcn.1602636
  44. Y Bouhnik, Am J Clin Nutr, 80, 1658 (2004)
  45. Martínez Inés, Kim Jaehyoung, Duffy Patrick R., Schlegel Vicki L., Walter Jens, Resistant Starches Types 2 and 4 Have Differential Effects on the Composition of the Fecal Microbiota in Human Subjects, 10.1371/journal.pone.0015046
  46. MAEDA Masatami, UEDA Hiroshi, YAMAZAKI Masatoshi, OHTSUKA Masataka, DOI Umeyuki, Biological Response Modifier Activity of Lactococcus lactis 332, 10.1248/yakushi1947.118.4_150
  47. Tims Sebastian, Derom Catherine, Jonkers Daisy M, Vlietinck Robert, Saris Wim H, Kleerebezem Michiel, de Vos Willem M, Zoetendal Erwin G, Microbiota conservation and BMI signatures in adult monozygotic twins, 10.1038/ismej.2012.146
  48. Dworkin M, Falcom S, Rosenberg E, Schleifer K, Stackebrandt E, editors (2006) The prokaryotes A handbook on the biology of bacteria. New York: Springer.
  49. M Moosavian, Pakistan Journal of Medical Sciences, 24, 209 (2008)
  50. XQ Zeng, J Appl Microbiol, 108, 2059 (2010)
  51. Williams B. L., Hornig M., Parekh T., Lipkin W. I., Application of Novel PCR-Based Methods for Detection, Quantitation, and Phylogenetic Characterization of Sutterella Species in Intestinal Biopsy Samples from Children with Autism and Gastrointestinal Disturbances, 10.1128/mbio.00261-11
  52. Cheng Jing, Kalliomäki Marko, Heilig Hans GHJ, Palva Airi, Lähteenoja Hannu, de Vos Willem M, Salojärvi Jarkko, Satokari Reetta, Duodenal microbiota composition and mucosal homeostasis in pediatric celiac disease, 10.1186/1471-230x-13-113
  53. Whitford M. F., Yanke L. J., Forster R. J., Teather R. M., Lachnobacterium bovis gen. nov., sp. nov., a novel bacterium isolated from the rumen and faeces of cattle, 10.1099/00207713-51-6-1977
Bibliographic reference Korpela, Katri ; Flint, Harry J. ; Johnstone, Alexandra M. ; Lappi, Jenni ; Poutanen, Kaisa ; et. al. Gut microbiota signatures predict host and microbiota responses to dietary interventions in obese individuals. In: PLoS One, Vol. 9, no. 3 (2014)
Permanent URL http://hdl.handle.net/2078.1/160318