Accès à distance ? S'identifier sur le proxy UCLouvain
Design and validation of a low density array (Nosochip) for the detection and identification of the main pathogenic bacteria and fungi responsible for nosocomial pneumonia.
Primary tabs
Document type | Article de périodique (Journal article) |
---|---|
Access type | Accès restreint |
Publication date | 2008 |
Language | Anglais |
Journal information | "European Journal of Clinical Microbiology & Infectious Diseases : an international journal on pathogenesis, diagnosis, epidemiology, therapy, and prevention of infectious diseases" - Vol. 27, no.1, p. 17-27 (2008) |
Peer reviewed | yes |
Publisher | Springer ((Germany) Heidelberg) |
issn | 0934-9723 |
e-issn | 1435-4373 |
Affiliations |
UCL
- (MGD) Laboratoire de biologie clinique UCL - SSS/IREC/MBLG - Pôle de Microbiologie médicale |
MESH Subject | Bacteria ; Oligonucleotide Array Sequence Analysis ; Oligonucleotide Probes ; Pneumonia ; Polymerase Chain Reaction ; RNA, Ribosomal, 16S ; Reproducibility of Results ; Sensitivity and Specificity ; Base Sequence ; Cross Infection ; DNA Primers ; Fungi ; Humans ; Microarray Analysis ; Molecular Sequence Data ; Nucleic Acid Hybridization |
Links |
- Anthony RM, Brown TJ, French GL (2000) Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J Clin Microbiol 38:781–788
- Buck GE, O’Hara LC, Summersgill JT (1992) Rapid, sensitive detection of Mycoplasma pneumoniae in simulated clinical specimens by DNA amplification. J Clin Microbiol 30:3280–3283
- Conrads Georg, Citron Diane M, Merriam Vreni, Tyrrell Kerin L, Goldstein Ellie J C, Claros Marina C, 16S-23S rDNA internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Fusobacterium., 10.1099/00207713-52-2-493
- Cukras AR, Southworth DR, Brunelle JL, Culver GM, Green R (2003) Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex. Mol Cell 12:321–328
- Dagan R, Shriker O, Hazan I, Leibovitz E, Greenberg D, Schlaeffer F, Levy R (1998) Prospective study to determine clinical relevance of detection of pneumococcal DNA in sera of children by PCR. J Clin Microbiol 36:669–673
- Espy M (2006) Real-time PCR in clinical microbiology: applications for routine laboratory testing. Clin Microbiol Rev 19:165–256
- Folgueira L, Delgado R, Palenque E, Aguado JM, Noriega AR (1996) Rapid diagnosis of Mycobacterium tuberculosis bacteremia by PCR. J Clin Microbiol 34:512–515
- Folgueira L, Delgado R, Palenque E, Noriega AR (1993) Detection of Mycobacterium tuberculosis DNA in clinical samples by using a simple lysis method and polymerase chain reaction. J Clin Microbiol 31:1019–1021
- Fukushima M, Kakinuma K, Hayashi H, Nagai H, Ito K, Kawaguchi R (2003) Detection and identification of Mycobacterium species isolates by DNA microarray. J Clin Microbiol 41:2605–2615
- Fukushima M, Kakinuma, K, Kawaguchi R (2002) Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence. J Clin Microbiol 40:2779–2785
- Gonzalez N, Romero J, Espejo RT (2003) Comprehensive detection of bacterial populations by PCR amplification of the 16S–23S rRNA spacer region. J Microbiol Methods 55:91–97
- Hamels S, Gala JL, Dufour S, Vannuffel P, Zammatteo N, Remacle J (2001) Consensus PCR and microarray for diagnosis of the genus Staphylococcus, species, and methicillin resistance. Biotechniques 31:1364–1366, 1368, 1370–1372
- Jonas D, Speck M, Daschner FD, Grundmann H (2002) Rapid PCR-based identification of methicillin-resistant Staphylococcus aureus from screening swabs. J Clin Microbiol 40:1821–1823
- Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG (1999) Development of a PCR assay for rapid detection of enterococci. J Clin Microbiol 37:3497–3503
- Keramas G, Bang DD, Lund M, Madsen M, Bunkenborg H, Telleman P, Christensen CB (2004) Use of culture, PCR analysis, and DNA microarrays for detection of Campylobacter jejuni and Campylobacter coli from chicken feces. J Clin Microbiol 42:3985–3991
- Kotilainen P, Jalava J, Meurman O, Lehtonen OP, Rintala E, Seppala OP, Eerola E, Nikkari S (1998) Diagnosis of meningococcal meningitis by broad-range bacterial PCR with cerebrospinal fluid. J Clin Microbiol 36:2205–2209
- Leinberger DM, Schumacher U, Autenrieth IB, Bachmann TT (2005) Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses. J Clin Microbiol 43:4943–4953
- Mitterer G, Huber M, Leidinger E, Kirisits C, Lubitz W, Mueller MW, Schmidt WM (2004) Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences. J Clin Microbiol 42:1048–1057
- Pao CC, Yen TS, You JB, Maa JS, Fiss EH, Chang CH (1990) Detection and identification of Mycobacterium tuberculosis by DNA amplification. J Clin Microbiol 28:1877–1880
- Peplies J, Glockner FO, Amann R (2003) Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl Environ Microbiol 69:1397–1407
- Rantakokko-Jalava K, Nikkari S, Jalava J, Eerola E, Skurnik M, Meurman O, Ruuskanen O, Alanen A, Kotilainen E, Toivanen P, Kotilainen P (2000) Direct amplification of rRNA genes in diagnosis of bacterial infections. J Clin Microbiol 38:32–39
- Reece RJ, Maxwell A (1991) DNA gyrase: structure and function. Crit Rev Biochem Mol Biol 26:335–375
- Robert F, Brakier-Gingras L (2003) A functional interaction between ribosomal proteins S7 and S11 within the bacterial ribosome. J Biol Chem 278:44913–44920
- Roth SB, Jalava J, Ruuskanen O, Ruohola A, Nikkari S (2004) Use of an oligonucleotide array for laboratory diagnosis of bacteria responsible for acute upper respiratory infections. J Clin Microbiol 42:4268–4274
- Sambrook J, Gething MJ (1989) Protein structure. Chaperones, paperones. Nature 342:224–225
- Song KP, Chan, TK, Ji ZL, Wong SW (2000) Rapid identification of Pseudomonas aeruginosa from ocular isolates by PCR using exotoxin A-specific primers. Mol Cell Probes 14:199–204
- Takewaki S, Okuzumi K, Ishiko H, Nakahara K, Ohkubo A, Nagai R (1993) Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes. J Clin Microbiol 31:446–450
- Wang RF, Beggs ML, Robertson LH, Cerniglia CE (2002) Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol Lett 213:175–182
- Zammatteo N, Jeanmart L, Hamels S, Courtois S, Louette P, Hevesi L, Remacle J (2000) Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays. Anal Biochem 280:143–150
Bibliographic reference | Burteau, S ; Bogaerts, Pierre ; de Mendonça, R ; Irenge, L ; Berhin, C ; et. al. Design and validation of a low density array (Nosochip) for the detection and identification of the main pathogenic bacteria and fungi responsible for nosocomial pneumonia.. In: European Journal of Clinical Microbiology & Infectious Diseases : an international journal on pathogenesis, diagnosis, epidemiology, therapy, and prevention of infectious diseases, Vol. 27, no.1, p. 17-27 (2008) |
---|---|
Permanent URL | http://hdl.handle.net/2078.1/124366 |